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AT2G27330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G06210.1); Has 12115 Blast hits to 12109 proteins in 1409 species: Archae - 61; Bacteria - 8502; Metazoa - 534; Fungi - 454; Plants - 424; Viruses - 1; Other Eukaryotes - 2139 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:BT025704EMBL:CP002685
EnsemblPlants:AT2G27330EnsemblPlants:AT2G27330.1entrez:817276Gene3D:3.30.70.330
GeneID:817276GO:GO:0000166GO:GO:0003676Gramene:AT2G27330.1
hmmpanther:PTHR24012HOGENOM:HOG000276232IntAct:Q1ECN0InterPro:IPR000504
InterPro:IPR003954InterPro:IPR012677KEGG:ath:AT2G27330OMA:IMDKIRC
Pfam:PF00076Pfscan:PS50102PhylomeDB:Q1ECN0PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_565646.2SMART:SM00360SMART:SM00361
SMR:Q1ECN0STRING:3702.AT2G27330.1SUPFAM:SSF54928TAIR:AT2G27330
UniGene:At.38782UniProt:Q1ECN0
Coordinates (TAIR10) chr2:-:11695350..11696563
Molecular Weight (calculated) 12911.40 Da
IEP (calculated) 9.10
GRAVY (calculated) -0.19
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTQFLYRSF TPLLFSRSFS STLFVKGISF SSTEETLTQA FSQYGQVLKV DVIMDKIRCR PKGFAYVTFS SKEEAEKALL ELNAQLVDGR VVILDTTKAA
101: KHNPPDTKPN HAGGDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)