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AT4G39920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C-CAP/cofactor C-like domain-containing protein
Curator
Summary (TAIR10)
Microtubule-folding cofactor, produces assembly-competent alpha-/beta-tubulin heterodimers.
Computational
Description (TAIR10)
PORCINO (POR); FUNCTIONS IN: binding; INVOLVED IN: tubulin complex assembly, cytokinesis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); Has 497 Blast hits to 493 proteins in 165 species: Archae - 0; Bacteria - 11; Metazoa - 222; Fungi - 88; Plants - 54; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y28BeggNOG:KOG2512EMBL:AF486850EMBL:AL035708
EMBL:AL161596EMBL:BT024735EMBL:CP002687EnsemblPlants:AT4G39920
EnsemblPlants:AT4G39920.1entrez:830151Gene3D:2.160.20.70GeneID:830151
Genevisible:Q9SMR2GO:GO:0000226GO:GO:0000902GO:GO:0005737
GO:GO:0007021GO:GO:0007023Gramene:AT4G39920.1hmmpanther:PTHR15139
hmmpanther:PTHR15139:SF0HOGENOM:HOG000030372InParanoid:Q9SMR2InterPro:IPR006599
InterPro:IPR012945InterPro:IPR016098InterPro:IPR017901InterPro:IPR027684
InterPro:IPR031925KEGG:ath:AT4G39920OMA:CGPIARSPANTHER:PTHR15139
PaxDb:Q9SMR2Pfam:PF07986Pfam:PF16752Pfam:Q9SMR2
Pfscan:PS51329PhylomeDB:Q9SMR2PIR:T06098PRIDE:Q9SMR2
PRO:PR:Q9SMR2PROSITE:PS51329ProteinModelPortal:Q9SMR2Proteomes:UP000006548
RefSeq:NP_195702.1SMART:SM00673SMR:Q9SMR2STRING:3702.AT4G39920.1
TAIR:AT4G39920tair10-symbols:PORtair10-symbols:TFC CUniGene:At.43301
UniProt:Q9SMR2
Coordinates (TAIR10) chr4:+:18515882..18516919
Molecular Weight (calculated) 38311.20 Da
IEP (calculated) 6.19
GRAVY (calculated) -0.44
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDGQSSVA ETLDPALQKK HHDMLERLSA RHQARKSDSP DSSSSSSSTL ESTSSFLAKF SDSKRSIESR IAESRLASSS TDSSKLKSDL AEISVAIDNL
101: EKLLAENSYF LPSYEVRSSL KIVSDLKQSL DILSGELVPK KKFSFKSKST TKKPESKLPE IQKPDVVLPP KLVPVRDSPG LRNKHGETLV KSFEGSSIGE
201: FTLSDLDSCQ VKLTGTVNAL FLHRLKKCSV YTGPVIGSIL IDDVEDCVLV LASHQIRIHC ARKSDFYLRV RSRPIIEDSN GVRFAPYCLD YKGIDEDLKT
301: AGLEEETNNW ANVDDFRWLR AVQSPNWSLL PEEERVSLLT ISGDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)