AT1G03560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 53521 Blast hits to 15193 proteins in 316 species: Archae - 3; Bacteria - 91; Metazoa - 613; Fungi - 824; Plants - 50230; Viruses - 0; Other Eukaryotes - 1760 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:890428..892410 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74632.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.86 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 660 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRRFYRKPFS VPLLNRPHCS SQSHCLYKNG DFLSDDSKCS PLSSSRTSVR WVFNSSSLPP PEWIEPFNDV SDLVKSNRNL LPSPWVSQIL NLLDGSASME 101: SNLDGFCRKF LIKLSPNFVS FVLKSDEIRE KPDIAWSFFC WSRKQKKYTH NLECYVSLVD VLALAKDVDR IRFVSSEIKK FEFPMTVSAA NALIKSFGKL 201: GMVEELLWVW RKMKENGIEP TLYTYNFLMN GLVSAMFVDS AERVFEVMES GRIKPDIVTY NTMIKGYCKA GQTQKAMEKL RDMETRGHEA DKITYMTMIQ 301: ACYADSDFGS CVALYQEMDE KGIQVPPHAF SLVIGGLCKE GKLNEGYTVF ENMIRKGSKP NVAIYTVLID GYAKSGSVED AIRLLHRMID EGFKPDVVTY 401: SVVVNGLCKN GRVEEALDYF HTCRFDGLAI NSMFYSSLID GLGKAGRVDE AERLFEEMSE KGCTRDSYCY NALIDAFTKH RKVDEAIALF KRMEEEEGCD 501: QTVYTYTILL SGMFKEHRNE EALKLWDMMI DKGITPTAAC FRALSTGLCL SGKVARACKI LDELAPMGVI LDAACEDMIN TLCKAGRIKE ACKLADGITE 601: RGREVPGRIR TVMINALRKV GKADLAMKLM HSKIGIGYER MGSVKRRVKF TTLLETCFDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)