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AT1G26520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cobalamin biosynthesis CobW-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cobalamin biosynthesis CobW-like protein; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: Cobalamin biosynthesis CobW-like protein (TAIR:AT1G15730.1); Has 8517 Blast hits to 8427 proteins in 1716 species: Archae - 88; Bacteria - 6047; Metazoa - 151; Fungi - 280; Plants - 232; Viruses - 0; Other Eukaryotes - 1719 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0523eggNOG:KOG2743EMBL:BT022099EMBL:CP002684
EnsemblPlants:AT1G26520EnsemblPlants:AT1G26520.1entrez:839192Gene3D:3.30.1220.10
Gene3D:3.40.50.300GeneID:839192Gramene:AT1G26520.1hmmpanther:PTHR13748
hmmpanther:PTHR13748:SF31HOGENOM:HOG000182211InterPro:IPR003495InterPro:IPR011629
InterPro:IPR027417KEGG:ath:AT1G26520OMA:KEDQVCPPfam:PF02492
Pfam:PF07683PhylomeDB:Q500W8Proteomes:UP000006548RefSeq:NP_173974.3
SMART:SM00833SMR:Q500W8STRING:3702.AT1G26520.1SUPFAM:0041413
SUPFAM:SSF52540SUPFAM:SSF90002TAIR:AT1G26520UniGene:At.49920
UniGene:At.51774UniProt:Q500W8
Coordinates (TAIR10) chr1:-:9163448..9165594
Molecular Weight (calculated) 42015.00 Da
IEP (calculated) 4.51
GRAVY (calculated) -0.24
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKEEAEGVK MEDDDEEPPM AVQIHPDVSV GKVHSSSDTV SVGVSVITGY LGAGKSTLVN YILNGKHGKR IAVILNEFGE EIGVERAMIN EGEEGAIVEE
101: WVELANGCVC CTVKHSLVQA LEQLVQRKDR LDHILLETTG LANPAPLASI LWLDDQLESE VKLDCIVTVV DAKNLRFQLN ERRDSSSFPE AFNQIAFADT
201: IIMNKVDLIS QEESDELEKE IHSINSLANV IRSVRCQVDL SNILNCQAYD STHVSRLESL LEANKSLTTT DLHDSGVRTL CISEPQPINL DKVRLWLEEI
301: LWDKKSEMDV YRCKAVLSIQ NSDQMHILQA VRDIYEIVPA RKWSEEENRT NKIVFIGHKL DEEVLRSGLR DCRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)