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AT1G72190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-isomer specific 2-hydroxyacid dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: homoserine biosynthetic process, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT4G34200.1); Has 28327 Blast hits to 28320 proteins in 2696 species: Archae - 466; Bacteria - 17634; Metazoa - 719; Fungi - 1167; Plants - 499; Viruses - 5; Other Eukaryotes - 7837 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0111eggNOG:ENOG410ISS1EMBL:CP002684EnsemblPlants:AT1G72190
EnsemblPlants:AT1G72190.1entrez:843551Gene3D:3.40.50.720GeneID:843551
GO:GO:0016616GO:GO:0051287Gramene:AT1G72190.1gramene_pathway:1.1.1.95
gramene_pathway:SERSYN-PWYhmmpanther:PTHR10996hmmpanther:PTHR10996:SF108InParanoid:F4IBQ3
InterPro:IPR006139InterPro:IPR006140InterPro:IPR016040InterPro:IPR029753
KEGG:ath:AT1G72190OMA:QNYHLCVPaxDb:F4IBQ3Pfam:PF00389
Pfam:PF02826PRIDE:F4IBQ3PROSITE:PS00671ProteinModelPortal:F4IBQ3
Proteomes:UP000006548RefSeq:NP_177364.2scanprosite:PS00671SMR:F4IBQ3
STRING:3702.AT1G72190.1SUPFAM:SSF51735SUPFAM:SSF52283TAIR:AT1G72190
UniGene:At.28051UniGene:At.48363UniGene:At.74870UniProt:F4IBQ3
Coordinates (TAIR10) chr1:-:27167458..27169696
Molecular Weight (calculated) 41451.60 Da
IEP (calculated) 8.84
GRAVY (calculated) 0.02
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MTIMFKIAKA TLRSRNSSVA SLFYSIQARS ISRQSKVVKI ERIVEKEDMH VTRVLFCGPH FPDSYNFTRE YLQPYPFIKV DVVHYRDVPE VIKNYHICVA
101: MTMQMDSNVI SRASNIKLIM QYGVGLDGVD IDAATKHGIK VARIPSEGTG NAASCSEMAI YLMLGLLKKQ NEMQISLRNR LLGEPTGDTL LGKTVFILGY
201: GNIGIELAKR LKPFGSRVIA TKRFWPASIV DSDSRLVDEK GSHEDIYTFA GKADIVVVCL RLNKETAEIV NKEFICSMKK GALLVNIARG GLINYESAFQ
301: NLESGHLGGL GIDVAWSEPF DPNDPILKFK NVIITPHVAG VTEYSYRSMA KIVGDLALQL HEGLPLTGIE FVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)