suba logo
AT5G19210.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
peroxisome 0.917
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G58510.3); Has 29066 Blast hits to 29063 proteins in 2795 species: Archae - 157; Bacteria - 14563; Metazoa - 4524; Fungi - 3653; Plants - 2123; Viruses - 4; Other Eukaryotes - 4042 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0513eggNOG:KOG0327EMBL:BT044060EnsemblPlants:AT5G19210
EnsemblPlants:AT5G19210.1entrez:832041ExpressionAtlas:B5RID6Gene3D:3.40.50.300
GeneID:832041GO:GO:0003676GO:GO:0005524Gramene:AT5G19210.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF228HOGENOM:HOG000005705InterPro:IPR001650
InterPro:IPR011545InterPro:IPR027417KEGG:ath:AT5G19210PaxDb:B5RID6
Pfam:PF00270Pfam:PF00271Pfscan:PS51194PRIDE:B5RID6
PROSITE:PS51194ProteinModelPortal:B5RID6RefSeq:NP_197422.2SMART:SM00490
STRING:3702.AT5G19210.2SUPFAM:SSF52540TAIR:AT5G19210UniGene:At.31320
UniGene:At.429UniProt:B5RID6
Coordinates (TAIR10) chr5:+:6462100..6463687
Molecular Weight (calculated) 35459.30 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.02
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MQVTKVARML AAKSEIDVKG CTVMALLDGG TLRRHKSWLK AEPPAILVAT VASLCHMLEK HIFRIDSVRV LVVDEVDFLF YSSKQVGSVR KLLTSFSSCD
101: KRQTVFASAS IPQHKHFVHD CIQQKWTKRD VVHVHVSAIM PMPLCLLHRF VMCEKTNKHQ VLLALLESDA PESAIIFVGE QSEKSKKAGN DPSTTLLMEF
201: LKTSYKGSLE ILLLEGDMNF NSRAASLTEI RQGGGFLLVS TDIAARGIDL PETTHIFNFD LPQTVTDYLH RAGRAGRKPF SDRKCIVANL ITSEERFVLQ
301: RYENELMFSC EEMML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)