AT4G00760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pseudo-response regulator 8 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a response-regulator like protein. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pseudo-response regulator 8 (APRR8); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:327236..328955 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37838.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.50 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||||||||||
| Length | 336 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIRKCGYKVV ATTRADDLPL IINNKDKKID LVLAEFRLIE MNKYELLEKI RSICEIPVVV SGAHVKDAIV ECLCRGAKLC LEKPLMENDF KILWQFTVSR 101: QRNFRSQIDI NPPEKNHSIT HTQSLGAELK KNNNNSEVET EDLDKYKDEL GQGNKRKERA DTDTGEHTEK NNGSDLGDQK KPKLLFADDL QNETLEAVPN 201: IEEANNERKA PTEIKKNGES SEKKSPELVC MEEELQKWSA ESFIDLTASV ENESQDPLES VGDSVGPHEI PLSPPESSNN NVAAQLQMPT HEALDEEVMQ 301: DGLSLSDLEV DLQEGHGSNK ELFDKIFTDL AKELKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)