AT5G09410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ethylene induced calmodulin binding protein | ||||||||||||||||
| Curator Summary (TAIR10) |
calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum) | ||||||||||||||||
| Computational Description (TAIR10) |
ethylene induced calmodulin binding protein (EICBP.B); FUNCTIONS IN: calmodulin binding, transcription regulator activity, transcription activator activity; INVOLVED IN: response to freezing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Ankyrin repeat (InterPro:IPR002110), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (TAIR:AT5G64220.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2921457..2927291 | ||||||||||||||||
| Molecular Weight (calculated) | 111993.00 Da | ||||||||||||||||
| IEP (calculated) | 6.23 | ||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||
| Length | 989 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVDRRSFGSI TPPLQLDMEQ LLSEAQHRWL RPTEICEILQ NYHKFHIASE SPTRPASGSL FLFDRKVLRY FRKDGHNWRK KKDGKTIREA HEKLKVGSID 101: VLHCYYAHGE ANENFQRRCY WMLEQHLMHI VFVHYLEVKG NRTSIGMKEN NSNSVNGTAS VNIDSTASPT STLSSLCEDA DTGNRYGWTP APGMRNVSQV 201: HGNRVRESDS QRLVDVRALD TVGNSLTRFH DQPYCNNLLT QMQPSNTDSM LVEENSEKGG RLKAEHIRNP LQTQFNWQDD TDLALFEQSA QDNFETFSSL 301: LGSENLQPFG ISYQAPPSNM DSEYMPVMKI LRRSEDSLKK VDSFSKWAIK ELGEMEDLQM QSSRGDIAWT TVECETAAAG ISLSPSLSED QRFTIVDFWP 401: KSAKTDAEVE VMVIGTFLLS PQEVTKYNWS CMFGEVEVPA EILVDGVLCC HAPPHTAGHV PFYVTCSNRF ACSEVREFDF LSGSTQKINA TDVYGTYTNE 501: ASLQLRFEKM LAHRDFVHEH HIFEDVGDKR RQISKIMLLK EEKEYLLPGT YQRDSTKQEP KGQLFRELFE EELYIWLIHK VTEEGKGPNI LDEDGQGILH 601: FVAALGYDWA IKPVLAAGVN INFRDANGWS ALHWAAFSGR EETVAVLVSL GADAGALTDP SPELPLGKTA ADLAYANGHR GISGFLAESS LTSYLEKLTV 701: DSKENSPANS CGEKAVQTVS ERTAAPMTYG DVPEKLSLKD SLTAVRNATQ AADRLHQVFR MQSFQRKQLC DIGDDEKIDI SDQLAVSFAA SKTKNPGQGD 801: VSLSCAATHI QKKYRGWKKR KEFLLIRQRI VKIQAHVRGH QVRKQYRTVI WSVGLLEKII LRWRRKGNGL RGFKRNAVAK TVEPEPPVSA ICPRIPQEDE 901: YDYLKEGRKQ TEERLQKALT RVKSMVQYPE ARDQYRRLLT VVEGFRENEA SSSASINNKE EEAVNCEEDD FIDIESLLND DTLMMSISP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)