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AT3G61590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HAWAIIAN SKIRT (HWS); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G15710.1); Has 852 Blast hits to 850 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 852; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10646eggNOG:ENOG410IVABeggNOG:ENOG410XPZAEMBL:AF386994
EMBL:AL132962EMBL:BT000054EMBL:CP002686EnsemblPlants:AT3G61590
EnsemblPlants:AT3G61590.1EnsemblPlants:AT3G61590.2entrez:825332Gene3D:2.120.10.80
GeneID:825332Genevisible:Q9M310GO:GO:0004842GO:GO:0048513
Gramene:AT3G61590.1Gramene:AT3G61590.2hmmpanther:PTHR10706hmmpanther:PTHR10706:SF127
HOGENOM:HOG000238968InParanoid:Q9M310IntAct:Q9M310InterPro:IPR001810
InterPro:IPR015915KEGG:ath:AT3G61590OMA:RHGLIMYPaxDb:Q9M310
Pfam:PF00646Pfam:Q9M310Pfscan:PS50181PhylomeDB:Q9M310
PIR:T47951PRIDE:Q9M310PRO:PR:Q9M310PROSITE:PS50181
ProteinModelPortal:Q9M310Proteomes:UP000006548RefSeq:NP_001190155.1RefSeq:NP_191718.1
SMART:SM00256STRING:3702.AT3G61590.1SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT3G61590tair10-symbols:HStair10-symbols:HWSUniGene:At.951
UniPathway:UPA00143UniProt:Q9M310
Coordinates (TAIR10) chr3:+:22792914..22794149
Molecular Weight (calculated) 46973.90 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.22
Length 411 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAETSWTNY PYSYITYVPE AESYREQSDD EAKVETFSMD SLLPDDLLER ILSFLPIASI FRAGTVCKRW NEIVSSRRFL CNFSNNSVSQ RPWYFMFTTT
101: DDPSGYAYDP IIRKWYSFDL PCIETSNWFV ASSCGLVCFM DNDCRNKIYV SNPITKQWRT LIEPPGHKST DYTAMSTSVN RANQAVNRAN RSYSVSIVKS
201: KQVPGNFFQW DLSIHLYSSE TMTWTTLVND VLSGWRGGNE SVICNNVLYF MIYSTGGSDH RHGLIASNLS SIGSPSSGIL MRSFIPMPCS LTCGRLMNLR
301: ERLVIVGGIG KHDRPEVIKG IGIWVLKGKE WVEMAKMPQR FFQGFGEFDE VFASSGTDDL VYIQSYGSPA LLTFDMNLKY WRWSQKCPVT KKFPLQLFTG
401: FCFEPRLEIA P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)