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AT1G64530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant regulator RWP-RK family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: NIN like protein 7 (TAIR:AT4G24020.1); Has 703 Blast hits to 646 proteins in 50 species: Archae - 0; Bacteria - 2; Metazoa - 50; Fungi - 0; Plants - 585; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
BioGrid:27982eggNOG:ENOG410IKM4eggNOG:ENOG410YA7WEMBL:AC009519
EMBL:AY091029EMBL:BT000933EMBL:CP002684EnsemblPlants:AT1G64530
EnsemblPlants:AT1G64530.1entrez:842761GeneID:842761Genevisible:Q8RWY4
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT1G64530.1hmmpanther:PTHR32002hmmpanther:PTHR32002:SF4HOGENOM:HOG000237689
InParanoid:Q8RWY4IntAct:Q8RWY4InterPro:IPR000270InterPro:IPR003035
iPTMnet:Q8RWY4KEGG:ath:AT1G64530OMA:FKESTGQPaxDb:Q8RWY4
Pfam:PF00564Pfam:PF02042Pfam:Q8RWY4Pfscan:PS51519
Pfscan:PS51745PhylomeDB:Q8RWY4PRIDE:Q8RWY4PRO:PR:Q8RWY4
PROSITE:PS51519PROSITE:PS51745ProteinModelPortal:Q8RWY4Proteomes:UP000006548
RefSeq:NP_176634.1SMART:SM00666SMR:Q8RWY4STRING:3702.AT1G64530.1
SUPFAM:SSF54277TAIR:AT1G64530UniGene:At.27886UniProt:Q8RWY4
Coordinates (TAIR10) chr1:+:23959820..23962896
Molecular Weight (calculated) 93868.40 Da
IEP (calculated) 6.30
GRAVY (calculated) -0.36
Length 841 amino acids
Sequence (TAIR10)
(BLAST)
001: MELDDLDLSG SWPLDQITFA SNFKSPVIFS SSEQPFSPLW SFSETSGDVG GELYSAAVAP TRFTDYSVLL ASSESETTTK ENNQVPSPSW GIMPLENPDS
101: YCAIKAKMTQ ALRYFKESTG QQHVLAQVWA PVKNRGRYVL TTSGQPFVLG PNSNGLNQYR MVSLTYMFSL DGERDGELGL PGRVFRKKLP EWTPNVQYYS
201: SKEFSRLGHA LHYNVQGTLA LPVFEPSRQL CVGVVELIMT SPKINYAPEV EKVCKALEAV NLKTSEILNH ETTQICNEGR QNALAEILEI LTVVCETYKL
301: PLAQTWVPCR HRSVLAFGGG FKKSCSSFDG SCMGKVCMST SDLAVYVVDA HVWGFRDACA EHHLQKGQGV AGRAFQSGNL CFCRDVTRFC KTDYPLVHYA
401: RMFKLTSCFA VCLKSTYTGD DEYVLEFFLP PAITDKSEQD CLLGSLLQTM KQHYSSLKVV SETELCENNM SLEVVEASED GMVYSKLEPI RIHHPAQISK
501: DYLELNAPEQ KVSLNSDFME NNEVDDGVER FQTLDPIPEA KTVKKSERKR GKTEKTISLE VLQQYFAGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK
601: INKVNRSLTR LKHVIDSVQG ADGSLNLTSL SPRPWPHQIP PIDIQLAKNC PPTSTSPLSN LQDVKIENRD AEDSAGSSTS RASCKVNPIC ETRFRLPTHN
701: QEPSRQVALD DSDSSSKNMT NFWAHLTCQD TASPTILQHK LVSIKATYRE DIIRFKISPE SVSITELKQQ VAKRLKLETA AFELKYLDDD REWVSVSCDA
801: DLSECLDTSA AKANTLRLSV HDVTFNFGSS CESSEETMMC L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)