AT1G64530.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Plant regulator RWP-RK family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: NIN like protein 7 (TAIR:AT4G24020.1); Has 703 Blast hits to 646 proteins in 50 species: Archae - 0; Bacteria - 2; Metazoa - 50; Fungi - 0; Plants - 585; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:+:23959820..23962896 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 93868.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 841 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MELDDLDLSG SWPLDQITFA SNFKSPVIFS SSEQPFSPLW SFSETSGDVG GELYSAAVAP TRFTDYSVLL ASSESETTTK ENNQVPSPSW GIMPLENPDS 101: YCAIKAKMTQ ALRYFKESTG QQHVLAQVWA PVKNRGRYVL TTSGQPFVLG PNSNGLNQYR MVSLTYMFSL DGERDGELGL PGRVFRKKLP EWTPNVQYYS 201: SKEFSRLGHA LHYNVQGTLA LPVFEPSRQL CVGVVELIMT SPKINYAPEV EKVCKALEAV NLKTSEILNH ETTQICNEGR QNALAEILEI LTVVCETYKL 301: PLAQTWVPCR HRSVLAFGGG FKKSCSSFDG SCMGKVCMST SDLAVYVVDA HVWGFRDACA EHHLQKGQGV AGRAFQSGNL CFCRDVTRFC KTDYPLVHYA 401: RMFKLTSCFA VCLKSTYTGD DEYVLEFFLP PAITDKSEQD CLLGSLLQTM KQHYSSLKVV SETELCENNM SLEVVEASED GMVYSKLEPI RIHHPAQISK 501: DYLELNAPEQ KVSLNSDFME NNEVDDGVER FQTLDPIPEA KTVKKSERKR GKTEKTISLE VLQQYFAGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK 601: INKVNRSLTR LKHVIDSVQG ADGSLNLTSL SPRPWPHQIP PIDIQLAKNC PPTSTSPLSN LQDVKIENRD AEDSAGSSTS RASCKVNPIC ETRFRLPTHN 701: QEPSRQVALD DSDSSSKNMT NFWAHLTCQD TASPTILQHK LVSIKATYRE DIIRFKISPE SVSITELKQQ VAKRLKLETA AFELKYLDDD REWVSVSCDA 801: DLSECLDTSA AKANTLRLSV HDVTFNFGSS CESSEETMMC L |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)