AT4G15430.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ERD (early-responsive to dehydration stress) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT3G21620.1); Has 1447 Blast hits to 1280 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 705; Plants - 434; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:8828214..8831354 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87171.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.55 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 761 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATINDIGVA AAINIVTAFA FLLAFAIFRI QPVNDRVYFP KWYLKGLRSS SIQTGGFGSK FINLDFRSYI RFLNWMPEAL KMPEPELVDH AGLDSVVYLR 101: IYLLGLKIFF PIACVAFTTM VPVNWTNKGL DRLRHSNISF SDIDKLSLSN IPNGSPRFWV HLCMAYAITF WTCFILKREY QNIALMRLQF LANDQRRPNQ 201: FTVLVRNIPA DPHESICELV EHFFKVNHPD HYLTFQAVHD ATKLSELVLT RKQMQNLLDY NINKHMRNLS NRPVIKMGFL GCCGEEADGI KYYTSVVEGL 301: TREISEEKQR LRTGTKSIVP AAFVSFKSRW GAAVCAQTQQ TRNPTEWLTE WAAEPRDIYY DNLALPYVDL KIRRLIVGVA YFFLTFFFMI PIAFVQSLAN 401: IEGIEKAFPF LKPLIEVKLL KSIIQGFLPG IALKIFLLFL PRILMQMSKF EGFVSTSSLE RRAATRFYMF QFINVFLGSI VTGTAFQQLN SFLNQSANDI 501: PKTIGVSIPM KATFFITYIM VDGWAGVAGE ILRLKPLIIY HLKNSFLVRT EKDREEATDP GTIGFNTGEP QIQLYFLLGL VYAAVSPILL PFILVFFGLA 601: FVVYRHQVIN VYNQKYESAG KFWPDVHRRV VTALVVSQLL LMGLLSTKHA SKSTPLLLVL PLLTIGFHKH CKNRYQPAFV TYPLQQEAMI KDTLDRIREP 701: NLNLKAFLRD AYAHPEFRVG EDPEPEEKLE SDMSPPDLVA TKRWSWRNTP LPSKDSCREI P |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)