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AT2G17150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant regulator RWP-RK family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT4G35270.1); Has 626 Blast hits to 586 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 557; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Protein Annotations
BioGrid:1577eggNOG:ENOG410IE3GeggNOG:ENOG41129QXEMBL:AC007127
EMBL:AK221727EMBL:BT000911EMBL:CP002685EnsemblPlants:AT2G17150
EnsemblPlants:AT2G17150.1entrez:816220GeneID:816220Genevisible:Q8H111
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
hmmpanther:PTHR32002hmmpanther:PTHR32002:SF3HOGENOM:HOG000237689InParanoid:Q8H111
IntAct:Q8H111InterPro:IPR000270InterPro:IPR003035KEGG:ath:AT2G17150
OMA:DEYPRIKPaxDb:Q8H111Pfam:PF00564Pfam:PF02042
Pfam:Q8H111Pfscan:PS51519Pfscan:PS51745PhylomeDB:Q8H111
PRIDE:Q8H111PRO:PR:Q8H111PROSITE:PS51519PROSITE:PS51745
ProteinModelPortal:Q8H111Proteomes:UP000006548RefSeq:NP_001031361.2RefSeq:NP_179306.2
SMART:SM00666STRING:3702.AT2G17150.1SUPFAM:SSF54277TAIR:AT2G17150
UniGene:At.40185UniProt:Q8H111
Coordinates (TAIR10) chr2:-:7467049..7470533
Molecular Weight (calculated) 100891.00 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.44
Length 909 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDGGSDGG EGNGGFSPNS SFGAFADTAM DLDFMDELLF DGCWLETTDS KSLKQTEQSP SASTAMNDNS PFLCFGENPS QDNFSNEETE RMFPQAEKFL
101: LEEAEVGKSW WIAPSASEGP SSSVKERLLQ AISGLNEAVQ DKDFLVQIWV PIQQEGKSFL TTWAQPHLFN QEYSSLAEYR HVSETYNFPA DEGMKDFVGL
201: PGRVFLQKFP EWTPDVRFFR RDEYPRIKEA QKCDVRGSLA LPVFERGSGT CLGVVEIVTT TQKMNYRQEL EKMCKALEAV DLRSSSNLNT PSSEFLQVYS
301: DFYCAALPEI KDFLATICRS YDFPLALSWA PCARQGKVGS RHSDENFSEC VSTIDSACSV PDEQSKSFWE ACSEHHLLQG EGIVGKAFEA TKLFFVPEVA
401: TFSKTNYPLA HHAKISGLHA ALAVPLKSKS GLVEFVLEFF FPKACLDTEA QQEMLKSLCV TLQQDFRSSN LFIKDLELEV VLPVRETMLF SENLLCGAET
501: VESLTEIQMQ ESSWIAHMIK ANEKGKDVSL SWEYQKEDPK ELSSGRENSQ LDPVPNNVPL EAEQLQQAST PGLRVDIGPS TESASTGGGN MLSSRRPGEK
601: KRAKTEKTIG LEVLRQYFAG SLKDAAKSIG VCPTTLKRIC RQHGIMRWPS RKIKKVGHSL KKLQLVMDSV QGAQGSIQLD SFYTSFPELN SPNMSSNGPS
701: LKSNEQPSHL NAQTDNGIMA EENPRSPSSS CSKSSGSSNN NENTGNILVA EDADAVLKRA HSEAQLHNVN QEETKCLART QSHKTFKEPL VLDNSSPLTG
801: SSNTSLRARG AIKVKATFGE ARIRFTLLPS WGFAELKQEI ARRFNIDDIS WFDLKYLDDD KEWVLLTCEA DLVECIDIYR LTQTHTIKIS LNEASQVKLS
901: GSFGNTGLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)