AT2G17150.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Plant regulator RWP-RK family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT4G35270.1); Has 626 Blast hits to 586 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 557; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:7467049..7470533 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 100891.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.83 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 909 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEDDGGSDGG EGNGGFSPNS SFGAFADTAM DLDFMDELLF DGCWLETTDS KSLKQTEQSP SASTAMNDNS PFLCFGENPS QDNFSNEETE RMFPQAEKFL 101: LEEAEVGKSW WIAPSASEGP SSSVKERLLQ AISGLNEAVQ DKDFLVQIWV PIQQEGKSFL TTWAQPHLFN QEYSSLAEYR HVSETYNFPA DEGMKDFVGL 201: PGRVFLQKFP EWTPDVRFFR RDEYPRIKEA QKCDVRGSLA LPVFERGSGT CLGVVEIVTT TQKMNYRQEL EKMCKALEAV DLRSSSNLNT PSSEFLQVYS 301: DFYCAALPEI KDFLATICRS YDFPLALSWA PCARQGKVGS RHSDENFSEC VSTIDSACSV PDEQSKSFWE ACSEHHLLQG EGIVGKAFEA TKLFFVPEVA 401: TFSKTNYPLA HHAKISGLHA ALAVPLKSKS GLVEFVLEFF FPKACLDTEA QQEMLKSLCV TLQQDFRSSN LFIKDLELEV VLPVRETMLF SENLLCGAET 501: VESLTEIQMQ ESSWIAHMIK ANEKGKDVSL SWEYQKEDPK ELSSGRENSQ LDPVPNNVPL EAEQLQQAST PGLRVDIGPS TESASTGGGN MLSSRRPGEK 601: KRAKTEKTIG LEVLRQYFAG SLKDAAKSIG VCPTTLKRIC RQHGIMRWPS RKIKKVGHSL KKLQLVMDSV QGAQGSIQLD SFYTSFPELN SPNMSSNGPS 701: LKSNEQPSHL NAQTDNGIMA EENPRSPSSS CSKSSGSSNN NENTGNILVA EDADAVLKRA HSEAQLHNVN QEETKCLART QSHKTFKEPL VLDNSSPLTG 801: SSNTSLRARG AIKVKATFGE ARIRFTLLPS WGFAELKQEI ARRFNIDDIS WFDLKYLDDD KEWVLLTCEA DLVECIDIYR LTQTHTIKIS LNEASQVKLS 901: GSFGNTGLS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)