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AT2G03190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.960
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SKP1-like 16
Curator
Summary (TAIR10)
one of SKP1 homologs. Gene is expressed specifically in the silique.
Computational
Description (TAIR10)
SKP1-like 16 (SK16); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 14 (TAIR:AT2G03170.1); Has 1394 Blast hits to 1390 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 520; Fungi - 175; Plants - 526; Viruses - 11; Other Eukaryotes - 162 (source: NCBI BLink).
Protein Annotations
BioGrid:250DIP:DIP-31337NeggNOG:COG5201eggNOG:KOG1724
EMBL:AC005313EMBL:BT015070EMBL:BT015726EMBL:CP002685
EnsemblPlants:AT2G03190EnsemblPlants:AT2G03190.1entrez:814848GeneID:814848
Genevisible:O81055GO:GO:0005634GO:GO:0006511GO:GO:0016567
GO:GO:0019005Gramene:AT2G03190.1hmmpanther:PTHR11165HOGENOM:HOG000172184
InParanoid:O81055IntAct:O81055InterPro:IPR001232InterPro:IPR011333
InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897KEGG:ath:AT2G03190
KO:K03094OMA:VIAHMIDPaxDb:O81055Pfam:O81055
Pfam:PF01466Pfam:PF03931PhylomeDB:O81055PIR:T02707
PIRSF:PIRSF028729PRIDE:O81055PRO:PR:O81055ProteinModelPortal:O81055
Proteomes:UP000006548RefSeq:NP_565297.1SMART:SM00512SMR:O81055
STRING:3702.AT2G03190.1SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT2G03190
tair10-symbols:ASK16tair10-symbols:SK16UniGene:At.50066UniPathway:UPA00143
UniProt:O81055
Coordinates (TAIR10) chr2:+:964232..964744
Molecular Weight (calculated) 19399.60 Da
IEP (calculated) 3.92
GRAVY (calculated) -0.46
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSNKIVLTS SDDESFEVEE AVARKLKVIA HMIDDDCADK AIPLENVTGN ILALVIEYCK KHVLDDVDDS DDSTEATSEN VNEEAKNELR TWDAEFMKEF
101: DMETVMKLIL AVNYLNVQDL LGLTCQTVAD HMKDMSPEEV RELFNIENDY TPEEEDAIRK ENAWAFEDLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)