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AT4G11590.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.948
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : F-box associated ubiquitination effector family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G15660.1); Has 1223 Blast hits to 1182 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1223; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:12063DNASU:826764EMBL:AL049500EMBL:AL161532
EMBL:CP002687EnsemblPlants:AT4G11590EnsemblPlants:AT4G11590.1entrez:826764
GeneID:826764Genevisible:Q9T0C7GO:GO:0005634GO:GO:0016567
Gramene:AT4G11590.1hmmpanther:PTHR31790hmmpanther:PTHR31790:SF10HOGENOM:HOG000064703
InParanoid:Q9T0C7IntAct:Q9T0C7InterPro:IPR001810InterPro:IPR013187
InterPro:IPR017451iPTMnet:Q9T0C7KEGG:ath:AT4G11590OMA:HRETKAM
PaxDb:Q9T0C7Pfam:PF00646Pfam:PF08268Pfam:Q9T0C7
PhylomeDB:Q9T0C7PIR:T04206PRIDE:Q9T0C7PRO:PR:Q9T0C7
ProteinModelPortal:Q9T0C7Proteomes:UP000006548RefSeq:NP_192896.1SMR:Q9T0C7
STRING:3702.AT4G11590.1SUPFAM:SSF81383TAIR:AT4G11590TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.23184UniGene:At.54279UniPathway:UPA00143
UniProt:Q9T0C7
Coordinates (TAIR10) chr4:+:7008603..7009796
Molecular Weight (calculated) 45949.70 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.11
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTSQFKKSK LIENNSQSLE ILKEKNFNDV PLDVAIEIFM RLPVKSVARF LLLSKFWAEI IRSRHFITSF QVRSSLQPRL LVVFIDLNKQ WNCEDWYFFS
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)