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AT3G23880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.895
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G06240.1); Has 2315 Blast hits to 2300 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2313; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:7303eggNOG:ENOG410J06YeggNOG:ENOG410Z2HMEMBL:AK117299
EMBL:AP001297EMBL:BT008354EMBL:CP002686EnsemblPlants:AT3G23880
EnsemblPlants:AT3G23880.1entrez:821971GeneID:821971Genevisible:Q9LIR8
GO:GO:0005634Gramene:AT3G23880.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF89
HOGENOM:HOG000112535IntAct:Q9LIR8InterPro:IPR001810InterPro:IPR013187
InterPro:IPR017451KEGG:ath:AT3G23880OMA:PLWISDGPaxDb:Q9LIR8
Pfam:PF00646Pfam:PF08268Pfam:Q9LIR8Pfscan:PS50181
PhylomeDB:Q9LIR8PRIDE:Q9LIR8PRO:PR:Q9LIR8PROSITE:PS50181
ProteinModelPortal:Q9LIR8Proteomes:UP000006548RefSeq:NP_189030.1SMART:SM00256
STRING:3702.AT3G23880.1SUPFAM:SSF81383TAIR:AT3G23880TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.37629UniProt:Q9LIR8
Coordinates (TAIR10) chr3:-:8622061..8623155
Molecular Weight (calculated) 41124.20 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.13
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)