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AT5G18650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CHY-type/CTCHY-type/RING-type Zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G62970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1658-MONOMEREC:6.3.2.-eggNOG:ENOG410XXHFeggNOG:KOG1940
EMBL:AC051627EMBL:AY064060EMBL:AY096370EMBL:CP002688
EnsemblPlants:AT5G18650EnsemblPlants:AT5G18650.1entrez:831983Gene3D:2.20.28.10
Gene3D:3.30.40.10GeneID:831983Genevisible:Q8VZK0GO:GO:0004842
GO:GO:0005634GO:GO:0005737GO:GO:0006952GO:GO:0008134
GO:GO:0008270GO:GO:0016567GO:GO:0016874GO:GO:1900425
GO:GO:1901485Gramene:AT5G18650.1hmmpanther:PTHR21319hmmpanther:PTHR21319:SF5
HOGENOM:HOG000231827IntAct:Q8VZK0InterPro:IPR001841InterPro:IPR004039
InterPro:IPR008913InterPro:IPR013083InterPro:IPR017921InterPro:IPR018957
InterPro:IPR031109KEGG:ath:AT5G18650KO:K10144OMA:EVYFHII
PANTHER:PTHR21319:SF5PaxDb:Q8VZK0Pfam:PF00097Pfam:PF05495
Pfam:PF13639Pfam:PF14599Pfscan:PS50089Pfscan:PS51266
Pfscan:PS51270PhylomeDB:Q8VZK0PROSITE:PS50089PROSITE:PS51266
PROSITE:PS51270ProteinModelPortal:Q8VZK0Proteomes:UP000006548Reactome:R-ATH-110320
RefSeq:NP_197366.1SMART:SM00184SMR:Q8VZK0STRING:3702.AT5G18650.1
SUPFAM:0053828SUPFAM:0053829SUPFAM:SSF57850TAIR:AT5G18650
UniGene:At.20087UniPathway:UPA00143UniProt:Q8VZK0
Coordinates (TAIR10) chr5:+:6218260..6220374
Molecular Weight (calculated) 30984.90 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.55
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MEASPNDRLH FGKMGFGCKH YKRRCQIRAP CCNEVFDCRH CHNESTSTLR NIYDRHDLVR QDVKQVICSV CDTEQPAAQV CSNCGVNMGE YFCSICIFYD
101: DDTEKQQFHC DDCGICRVGG RENFFHCKKC GSCYAVGLRN NHRCVENSMR HHCPICYEYL FDSLKDTNVM KCGHTMHVEC YNEMIKRDKF CCPICSRSVI
201: DMSKTWQRLD EEIEATAMPS DYRDKKVWIL CNDCNDTTEV HFHIIGQKCG HCRSYNTRAI APPVLPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)