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AT5G10020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : cytosol 18433157
AmiGO : plasma membrane 14506206
AmiGO : plasma membrane 17317660
AmiGO : plasma membrane 17644812
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : cytosol 18433157
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:18433157 (2008): cytosol
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich receptor-like protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G27060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0515eggNOG:ENOG410JRVAEMBL:FJ708774EnsemblPlants:AT5G10020
EnsemblPlants:AT5G10020.1entrez:830865ExpressionAtlas:C0LGT0Gene3D:3.80.10.10
GeneID:830865GO:GO:0004672GO:GO:0005524GO:GO:0005829
GO:GO:0016021Gramene:AT5G10020.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF28
InterPro:IPR000719InterPro:IPR001611InterPro:IPR011009InterPro:IPR013210
InterPro:IPR032675iPTMnet:C0LGT0OMA:RPSLFKFPaxDb:C0LGT0
Pfam:PF00069Pfam:PF08263Pfam:PF13516Pfam:Q0WR59
Pfscan:PS50011PhylomeDB:C0LGT0PRIDE:C0LGT0PROSITE:PS50011
ProteinModelPortal:C0LGT0RefSeq:NP_196564.1SMR:C0LGT0SMR:Q0WR59
STRING:3702.AT5G10020.1SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT5G10020
TMHMM:TMhelixUniGene:At.1618UniProt:C0LGT0UniProt:Q0WR59
Coordinates (TAIR10) chr5:+:3133514..3136949
Molecular Weight (calculated) 114721.00 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.17
Length 1048 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSHFLTFCFL SLLLLLHGAN AVTETELRSL LEFRKGIRDE TSHQRISWSD TSSLTDPSTC PNDWPGISCD PETGSIIAIN LDRRGLSGEL KFSTLSGLTR
0101: LRNLSLSGNS FSGRVVPSLG GISSLQHLDL SDNGFYGPIP GRISELWSLN HLNLSSNKFE GGFPSGFRNL QQLRSLDLHK NEIWGDVGEI FTELKNVEFV
0201: DLSCNRFNGG LSLPMENISS ISNTLRHLNL SHNALNGKFF SEESIGSFKN LEIVDLENNQ INGELPHFGS QPSLRILKLA RNELFGLVPQ ELLQSSIPLL
0301: ELDLSRNGFT GSISEINSST LTMLNLSSNG LSGDLPSSFK SCSVIDLSGN TFSGDVSVVQ KWEATPDVLD LSSNNLSGSL PNFTSAFSRL SVLSIRNNSV
0401: SGSLPSLWGD SQFSVIDLSS NKFSGFIPVS FFTFASLRSL NLSRNNLEGP IPFRGSRASE LLVLNSYPQM ELLDLSTNSL TGMLPGDIGT MEKIKVLNLA
0501: NNKLSGELPS DLNKLSGLLF LDLSNNTFKG QIPNKLPSQM VGFNVSYNDL SGIIPEDLRS YPPSSFYPGN SKLSLPGRIP ADSSGDLSLP GKKHHSKLSI
0601: RIAIIVASVG AAIMILFVLF AYHRTQLKDF HGRNRFTDQA TTRDTKFGRS SRPSLFNFSS NVEQQSSSLS FSNDHLLTAN SRSLSGIPGC EAEISEQGAP
0701: ATSAPTNLLD DYPAASGRKS SSGGSPLSSS PRFSDQPVML DVYSPDRLAG ELFFLDVSLK LTAEELSRAP AEVLGRSSHG TLYKATLDNG HMLTVKWLRV
0801: GLVRHKKDFA REAKKIGSLK HPNIVPLRAY YWGPREQERL LLSDYLRGES LAMHLYETTP RRYSPMSFSQ RLKVAVEVAQ CLLYLHDRAM PHGNLKPTNI
0901: ILSSPDNTVR ITDYCVHRLM TPSGVAEQIL NMSALGYSAP ELSSASKPIP TLKSDVYAFG VILMELLTRR SAGDIISGQT GAVDLTDWVR LCDQEGRRMD
1001: CIDRDIAGGE EFSKGMEDAL AVAIRCILSV NERPNIRQVL DHLTSISA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)