suba logo
AT1G72150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28524096 (2017): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:27936405 (2017): plasma membrane
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:26091700 (2015): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24397334 (2014): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:24030099 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:19000159 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PATELLIN 1
Curator
Summary (TAIR10)
novel cell-plate-associated protein that is related in sequence to proteins involved in membrane trafficking in other eukaryotes
Computational
Description (TAIR10)
PATELLIN 1 (PATL1); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, pollen tube growth; LOCATED IN: apoplast, plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: PATELLIN 2 (TAIR:AT1G22530.1); Has 71908 Blast hits to 38545 proteins in 2590 species: Archae - 322; Bacteria - 14379; Metazoa - 24510; Fungi - 7976; Plants - 3688; Viruses - 410; Other Eukaryotes - 20623 (source: NCBI BLink).
Protein Annotations
BioGrid:28766eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AC067754
EMBL:AK222034EMBL:AY045913EMBL:AY113865EMBL:CP002684
EnsemblPlants:AT1G72150EnsemblPlants:AT1G72150.1entrez:843546Gene3D:3.40.525.10
GeneID:843546Genevisible:Q56WK6GO:GO:0002020GO:GO:0005773
GO:GO:0005794GO:GO:0005886GO:GO:0006810GO:GO:0007049
GO:GO:0008289GO:GO:0009506GO:GO:0009507GO:GO:0009860
GO:GO:0016020GO:GO:0016021GO:GO:0048046GO:GO:0051301
Gramene:AT1G72150.1hmmpanther:PTHR23324hmmpanther:PTHR23324:SF67HOGENOM:HOG000238518
InParanoid:Q56WK6IntAct:Q56WK6InterPro:IPR001251InterPro:IPR009038
InterPro:IPR011074iPTMnet:Q56WK6KEGG:ath:AT1G72150ncoils:Coil
OMA:KSKFIFAPaxDb:Q56WK6Pfam:PF00650Pfam:PF03765
Pfam:Q56WK6Pfscan:PS50191Pfscan:PS50866PhylomeDB:Q56WK6
PIR:H96744PRIDE:Q56WK6PRO:PR:Q56WK6PROSITE:PS50191
PROSITE:PS50866ProteinModelPortal:Q56WK6Proteomes:UP000006548RefSeq:NP_177360.1
SMART:SM00516SMART:SM01100SMR:Q56WK6STRING:3702.AT1G72150.1
SUPFAM:0041713SUPFAM:SSF101576SUPFAM:SSF46938SUPFAM:SSF52087
TAIR:AT1G72150tair10-symbols:PATL1UniGene:At.43384UniProt:Q56WK6
Coordinates (TAIR10) chr1:+:27148558..27150652
Molecular Weight (calculated) 64049.40 Da
IEP (calculated) 4.50
GRAVY (calculated) -0.53
Length 573 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQEEVQKSA DVAAAPVVKE KPITDKEVTI PTPVAEKEEV AAPVSDEKAV PEKEVTPEKE APAAEAEKSV SVKEEETVVV AEKVVVLTAE EVQKKALEEF
101: KELVREALNK REFTAPVTPV KEEKTEEKKT EEETKEEEKT EEKKEETTTE VKVEEEKPAV PAAEEEKSSE AAPVETKSEE KPEEKAEVTT EKASSAEEDG
201: TKTVEAIEES IVSVSPPESA VAPVVVETVA VAEAEPVEPE EVSIWGVPLL QDERSDVILT KFLRARDFKV KEALTMLKNT VQWRKENKID ELVESGEEVS
301: EFEKMVFAHG VDKEGHVVIY SSYGEFQNKE LFSDKEKLNK FLSWRIQLQE KCVRAIDFSN PEAKSSFVFV SDFRNAPGLG KRALWQFIRR AVKQFEDNYP
401: EFAAKELFIN VPWWYIPYYK TFGSIITSPR TRSKMVLAGP SKSADTIFKY IAPEQVPVKY GGLSKDTPLT EETITEAIVK PAANYTIELP ASEACTLSWE
501: LRVLGADVSY GAQFEPTTEG SYAVIVSKTR KIGSTDEPVI TDSFKVGEPG KIVITIDNQT SKKKKVLYRF KTQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)