AT1G78830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Curculin-like (mannose-binding) lectin family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78820.1); Has 2662 Blast hits to 2603 proteins in 85 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 2651; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29637141..29638508 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50345.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.59 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 455 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRFAILVTL ALAIATVSVV IAQVPPEKQF RVVNEGEFGE YITEYDASYR FIESSNQSFF TSPFQLLFYN TTPSAYILAL RVGLRRDEST MRWIWDANRN 101: NPVGENATLS LGRNGNLVLA EADGRVKWQT NTANKGVTGF QILPNGNIVL HDKNGKFVWQ SFDHPTDTLL TGQSLKVNGV NKLVSRTSDS NGSDGPYSMV 201: LDKKGLTMYV NKTGTPLVYG GWPDHDFRGT VTFAVTREFD NLTEPSAYEL LLEPAPQPAT NPGNNRRLLQ VRPIGSGGGT LNLNKINYNG TISYLRLGSD 301: GSLKAYSYFP AATYLKWEES FSFFSTYFVR QCGLPSFCGD YGYCDRGMCN ACPTPKGLLG WSDKCAPPKT TQFCSGVKGK TVNYYKIVGV EHFTGPYVND 401: GQGPTSVNDC KAKCDRDCKC LGYFYKEKDK KCLLAPLLGT LIKDANTSSV AYIKY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)