AT1G78820.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: Curculin-like (mannose-binding) lectin family protein (TAIR:AT1G78830.1); Has 2616 Blast hits to 2560 proteins in 84 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 2610; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:29634401..29635768 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50597.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.59 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||
| Length | 455 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRFDYLLIT ALAISTVSVV MAQVPPEKQF RVLNEPGYAP YITEYDASYR FLNSPNQNFF TIPFQLMFYN TTPSAYVLAL RVGTRRDMSF TRWIWDANRN 101: NPVGDNSTLS FGRNGNLVLA ELNGQVKWQT NTANKGVTGF QILPNGNMVL HDKHGKFVWQ SFDHPTDTLL VGQSLKVNGV NKLVSRTSDM NGSDGPYSMV 201: LDNKGLTMYV NKTGTPLVYG GWTDHDFRGT VTFAVTREFD NLTEPSAYEL LLEPAPQPAT NPGNNRRLLQ VRPIGSGGGT LNLNKINYNG TISYLRLGSD 301: GSLKAFSYFP AATYLEWEET FAFFSNYFVR QCGLPTFCGD YGYCDRGMCV GCPTPKGLLA WSDKCAPPKT TQFCSGGKGK AVNYYKIVGV EHFTGPYVND 401: GQGPTSVNDC KAKCDRDCKC LGYFYKEKDK KCLLAPLLGT LIKDANTSSV AYIKY |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)