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AT4G16980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : arabinogalactan-protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
arabinogalactan-protein family; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 61554 Blast hits to 29210 proteins in 1485 species: Archae - 170; Bacteria - 11775; Metazoa - 21955; Fungi - 6238; Plants - 10828; Viruses - 2421; Other Eukaryotes - 8167 (source: NCBI BLink).
Protein Annotations
EMBL:AJ299418EMBL:AY035118EMBL:AY133870EMBL:CP002687
EnsemblPlants:AT4G16980EnsemblPlants:AT4G16980.1entrez:827406GeneID:827406
Gramene:AT4G16980.1IntAct:Q9FT76KEGG:ath:AT4G16980OMA:MASPPMM
Proteomes:UP000006548RefSeq:NP_193431.2STRING:3702.AT4G16980.1TAIR:AT4G16980
TMHMM:TMhelixUniGene:At.20040UniGene:At.36601UniProt:Q9FT76
Coordinates (TAIR10) chr4:+:9557087..9557581
Molecular Weight (calculated) 16749.20 Da
IEP (calculated) 4.37
GRAVY (calculated) 0.30
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSFSSQAF FLLTLSMVLI PFSLAQAPMM APSGSMSMPP MSSGGGSSVP PPVMSPMPMM TPPPMPMTPP PMPMTPPPMP MAPPPMPMAS PPMMPMTPST
101: SPSPLTVPDM PSPPMPSGME SSPSPGPMPP AMAASPDSGA FNVRNNVVTL SCVVGVVAAH FLLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)