suba logo
AT1G67740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem II BY
Curator
Summary (TAIR10)
PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese but its role is not well understood.
Computational
Description (TAIR10)
photosystem II BY (PSBY); FUNCTIONS IN: manganese ion binding; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast photosystem II, photosystem II; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbY (InterPro:IPR009388); Has 135 Blast hits to 91 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G67740-MONOMEReggNOG:ENOG410IXDTeggNOG:ENOG4111UZPEMBL:AC008113
EMBL:AF079800EMBL:AJ223306EMBL:AY050391EMBL:AY052269
EMBL:AY097348EMBL:CP002684EnsemblPlants:AT1G67740EnsemblPlants:AT1G67740.1
entrez:843099ExpressionAtlas:O49347GeneID:843099Genevisible:O49347
GO:GO:0009523GO:GO:0009533GO:GO:0009535GO:GO:0015979
GO:GO:0016021GO:GO:0030145Gramene:AT1G67740.1HAMAP:MF_00717
hmmpanther:PTHR34790hmmpanther:PTHR34790:SF1HOGENOM:HOG000029207InParanoid:O49347
InterPro:IPR009388iPTMnet:O49347KEGG:ath:AT1G67740KO:K02723
OMA:CLSINANPaxDb:O49347Pfam:O49347Pfam:PF06298
PhylomeDB:O49347PIR:T51847PRIDE:O49347PRO:PR:O49347
ProteinModelPortal:O49347Proteomes:UP000006548RefSeq:NP_176940.1STRING:3702.AT1G67740.1
TAIR:AT1G67740tair10-symbols:PSBYtair10-symbols:YCF32TMHMM:TMhelix
UniGene:At.24847UniProt:O49347UniProt:Q549N8
Coordinates (TAIR10) chr1:-:25394429..25394998
Molecular Weight (calculated) 19465.90 Da
IEP (calculated) 10.04
GRAVY (calculated) 0.36
Length 189 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAMATATK CMSLNPSPPK LQNQTKSKPF ISLPTPPKPN VSLAVTSTAL AGAVFSSLSY SEPALAIQQI AQLAAANASS DNRGLALLLP IVPAIAWVLY
101: NILQPAINQV NKMRESKGIV VGLGIGGGLA ASGLLTPPPE AYAAAEAAAA SSDSRGQLLL IVVTPALLWV LYNILQPALN QINKMRSGD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)