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AT2G20760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23424247 (2013): Golgi trans-Golgi network early endosome
  • PMID:23424247 (2013): plasma membrane
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Clathrin light chain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Clathrin light chain protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin light chain (InterPro:IPR000996); BEST Arabidopsis thaliana protein match is: Clathrin light chain protein (TAIR:AT2G40060.1); Has 1791 Blast hits to 1279 proteins in 282 species: Archae - 0; Bacteria - 563; Metazoa - 557; Fungi - 96; Plants - 161; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJTYeggNOG:ENOG410YB93EMBL:AC006234EMBL:AY057515
EMBL:AY057654EMBL:AY084472EMBL:BT025885EMBL:CP002685
EnsemblPlants:AT2G20760EnsemblPlants:AT2G20760.1entrez:816605GeneID:816605
Genevisible:Q9SKU1GO:GO:0005198GO:GO:0005829GO:GO:0005886
GO:GO:0006886GO:GO:0016192GO:GO:0030130GO:GO:0030132
Gramene:AT2G20760.1hmmpanther:PTHR10639hmmpanther:PTHR10639:SF7HOGENOM:HOG000241126
InParanoid:Q9SKU1IntAct:Q9SKU1InterPro:IPR000996KEGG:ath:AT2G20760
ncoils:CoilOMA:WRRLNTIPANTHER:PTHR10639PaxDb:Q9SKU1
Pfam:PF01086Pfam:Q9SKU1PhylomeDB:Q9SKU1PIR:A84593
PRIDE:Q9SKU1PRO:PR:Q9SKU1ProteinModelPortal:Q9SKU1Proteomes:UP000006548
RefSeq:NP_565484.1STRING:3702.AT2G20760.1TAIR:AT2G20760UniGene:At.23177
UniProt:Q9SKU1
Coordinates (TAIR10) chr2:-:8943279..8945108
Molecular Weight (calculated) 37226.90 Da
IEP (calculated) 6.15
GRAVY (calculated) -1.30
Length 338 amino acids
Sequence (TAIR10)
(BLAST)
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)