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AT5G48740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G67720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G48740-MONOMERBioGrid:20178EC:2.7.11.1eggNOG:ENOG410IJ2H
eggNOG:ENOG410YDE9EMBL:AB012242EMBL:CP002688EMBL:FJ708794
EnsemblPlants:AT5G48740EnsemblPlants:AT5G48740.1entrez:834932Gene3D:2.60.120.200
Gene3D:3.80.10.10GeneID:834932Genevisible:C0LGV0GO:GO:0004674
GO:GO:0005524GO:GO:0016021Gramene:AT5G48740.1hmmpanther:PTHR27003
hmmpanther:PTHR27003:SF61HOGENOM:HOG000116550InParanoid:C0LGV0InterPro:IPR000719
InterPro:IPR001611InterPro:IPR003591InterPro:IPR008271InterPro:IPR011009
InterPro:IPR013320InterPro:IPR017441InterPro:IPR024788InterPro:IPR032675
KEGG:ath:AT5G48740OMA:GWQDDPCPaxDb:C0LGV0Pfam:C0LGV0
Pfam:PF00069Pfam:PF12819Pfam:PF13855Pfscan:PS50011
Pfscan:PS51450PhylomeDB:C0LGV0PRIDE:C0LGV0PRO:PR:C0LGV0
PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011PROSITE:PS51450
ProteinModelPortal:C0LGV0Proteomes:UP000006548RefSeq:NP_199685.2scanprosite:PS00107
scanprosite:PS00108SMART:SM00220SMART:SM00369SMR:C0LGV0
SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT5G48740TMHMM:TMhelix
UniGene:At.49145UniGene:At.71199UniProt:C0LGV0
Coordinates (TAIR10) chr5:-:19765324..19769314
Molecular Weight (calculated) 99618.80 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.18
Length 895 amino acids
Sequence (TAIR10)
(BLAST)
001: MLFWVLLSSF CVFCFSSPDG FLSLSCGGSS YTAAYNISWV SDNDYIETGN TTTVTYAEGN STSSVPIRLF PDPQGRQCYK LPVRKDLSSV LIRATFVYRN
101: YDSQNSPPAF HVSLGRRITS TVDLRTNDPW IEELVWPVNN DSLLLCLLAV KGRGIPVISS LEVRPLPLGS YKYSLEGSPD IILRRSYRIN SGYTNGTIRY
201: PSDPFDRIWD PDQSYSPFHA SWSFNGLTKL NSFNITENPP ASVLKTARIL ARKESLSYTL SLHTPGDYYI ILYFAGILSL SPSFSVTIND EVKQSDYTVT
301: SSEAGTLYFT QKGISKLNIT LRKIKFNPQV SALEVYEILQ IPPEASSTTV SALKVIEQFT GQDLGWQDDP CTPLPWNHIE CEGNRVTSLF LSKINLRSIS
401: PTFGDLLDLK TLDLHNTSLT GAIQNVGSLK DLQKLNLSFN QLESFGSELE DLVNLEVLDL QNNSLQGSVP ETLGKLKKLR LLNLENNNLV GPLPQSLNIT
501: GLEVRITGNP CLSFSSISCN NVSSTIDTPQ VTIPINKKQR KQNRIAILLG VSGGALFATF LVFVFMSIFT RRQRNKERDI TRAQLKMQNW NASRIFSHKE
601: IKSATRNFKE VIGRGSFGAV YRGKLPDGKQ VAVKVRFDRT QLGADSFINE VHLLSQIRHQ NLVSFEGFCY EPKRQILVYE YLSGGSLADH LYGPRSKRHS
701: LNWVSRLKVA VDAAKGLDYL HNGSEPRIIH RDVKSSNILL DKDMNAKVSD FGLSKQFTKA DASHITTVVK GTAGYLDPEY YSTLQLTEKS DVYSFGVVLL
801: ELICGREPLS HSGSPDSFNL VLWARPNLQA GAFEIVDDIL KETFDPASMK KAASIAIRCV GRDASGRPSI AEVLTKLKEA YSLQLSYLAA SAHTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)