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AT4G35790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phospholipase D delta
Curator
Summary (TAIR10)
Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.
Computational
Description (TAIR10)
phospholipase D delta (PLDDELTA); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: response to water deprivation, response to cold, hyperosmotic salinity response, phosphatidic acid metabolic process, programmed cell death; LOCATED IN: microtubule cytoskeleton, plasma membrane, vacuole, membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D beta 1 (TAIR:AT2G42010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G35790-MONOMERBioCyc:ARA:GQT-485-MONOMERBioCyc:ARA:GQT-486-MONOMERBioCyc:MetaCyc:AT4G35790-MONOMER
BioGrid:15015BRENDA:3.1.4.4EC:3.1.4.4eggNOG:COG1502
eggNOG:KOG1329EMBL:AB031047EMBL:AF274239EMBL:AF306345
EMBL:AF322228EMBL:AF424632EMBL:AK227213EMBL:AL031986
EMBL:AL161588EMBL:AY113045EMBL:CP002687EnsemblPlants:AT4G35790
EnsemblPlants:AT4G35790.1entrez:829733ExpressionAtlas:Q9C5Y0Gene3D:2.60.40.150
GeneID:829733Genevisible:Q9C5Y0GO:GO:0004630GO:GO:0005509
GO:GO:0005773GO:GO:0005886GO:GO:0009409GO:GO:0009506
GO:GO:0009789GO:GO:0012501GO:GO:0016020GO:GO:0016042
GO:GO:0046470GO:GO:0046473GO:GO:0070290GO:GO:0090333
hmmpanther:PTHR18896hmmpanther:PTHR18896:SF60HOGENOM:HOG000240112InParanoid:Q9C5Y0
IntAct:Q9C5Y0InterPro:IPR000008InterPro:IPR001736InterPro:IPR011402
InterPro:IPR015679InterPro:IPR024632KEGG:00564+3.1.4.4KEGG:00565+3.1.4.4
KEGG:ath:AT4G35790KO:K01115OMA:HKIKLVRPANTHER:PTHR18896
PaxDb:Q9C5Y0Pfam:PF00168Pfam:PF00614Pfam:PF12357
Pfam:Q9C5Y0Pfscan:PS50004Pfscan:PS50035PhylomeDB:Q9C5Y0
PIRSF:PIRSF036470PRIDE:Q9C5Y0PRO:PR:Q9C5Y0PROSITE:PS50004
PROSITE:PS50035ProteinModelPortal:Q9C5Y0Proteomes:UP000006548RefSeq:NP_567989.1
RefSeq:NP_849501.1SMART:SM00155SMART:SM00239SMR:Q9C5Y0
STRING:3702.AT4G35790.1SUPFAM:SSF49562SUPFAM:SSF56024SwissPalm:Q9C5Y0
TAIR:AT4G35790tair10-symbols:ATPLDDELTAtair10-symbols:PLDDELTAUniGene:At.22959
UniProt:Q9C5Y0
Coordinates (TAIR10) chr4:-:16955774..16959875
Molecular Weight (calculated) 98922.30 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.40
Length 868 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKVSEDVM LLHGDLDLKI VKARRLPNMD MFSEHLRRLF TACNACARPT DTDDVDPRDK GEFGDKNIRS HRKVITSDPY VTVVVPQATL ARTRVLKNSQ
101: EPLWDEKFNI SIAHPFAYLE FQVKDDDVFG AQIIGTAKIP VRDIASGERI SGWFPVLGAS GKPPKAETAI FIDMKFTPFD QIHSYRCGIA GDPERRGVRR
201: TYFPVRKGSQ VRLYQDAHVM DGTLPAIGLD NGKVYEHGKC WEDICYAISE AHHMIYIVGW SIFHKIKLVR ETKVPRDKDM TLGELLKYKS QEGVRVLLLV
301: WDDKTSHDKF GIKTPGVMGT HDEETRKFFK HSSVICVLSP RYASSKLGLF KQQASPSSSI YIMTVVGTLF THHQKCVLVD TQAVGNNRKV TAFIGGLDLC
401: DGRYDTPEHR ILHDLDTVFK DDFHNPTFPA GTKAPRQPWH DLHCRIDGPA AYDVLINFEQ RWRKATRWKE FSLRLKGKTH WQDDALIRIG RISWILSPVF
501: KFLKDGTSII PEDDPCVWVS KEDDPENWHV QIFRSIDSGS VKGFPKYEDE AEAQHLECAK RLVVDKSIQT AYIQTIRSAQ HFIYIENQYF LGSSYAWPSY
601: RDAGADNLIP MELALKIVSK IRAKERFAVY VVIPLWPEGD PKSGPVQEIL YWQSQTMQMM YDVIAKELKA VQSDAHPLDY LNFYCLGKRE QLPDDMPATN
701: GSVVSDSYNF QRFMIYVHAK GMIVDDEYVL MGSANINQRS MAGTKDTEIA MGAYQPNHTW AHKGRHPRGQ VYGYRMSLWA EHLGKTGDEF VEPSDLECLK
801: KVNTISEENW KRFIDPKFSE LQGHLIKYPL QVDVDGKVSP LPDYETFPDV GGKIIGAHSM ALPDTLTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)