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AT3G61415.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SKP1-like 21
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1-like 21 (SK21); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: stem, fruit, root, inflorescence, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 20 (TAIR:AT2G45950.1); Has 1341 Blast hits to 1337 proteins in 268 species: Archae - 0; Bacteria - 12; Metazoa - 524; Fungi - 168; Plants - 472; Viruses - 11; Other Eukaryotes - 154 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5201eggNOG:KOG1724EMBL:AL132962EMBL:AY084971
EMBL:CP002686EnsemblPlants:AT3G61415EnsemblPlants:AT3G61415.1entrez:825314
GeneID:825314Genevisible:Q8LF97GO:GO:0005634GO:GO:0006511
GO:GO:0016567GO:GO:0019005hmmpanther:PTHR11165hmmpanther:PTHR11165:SF62
HOGENOM:HOG000034103InParanoid:Q8LF97InterPro:IPR001232InterPro:IPR011333
InterPro:IPR016072KEGG:ath:AT3G61415ncoils:CoilOMA:SIGQERQ
PaxDb:Q8LF97Pfam:PF01466Pfam:Q8LF97PhylomeDB:Q8LF97
PRIDE:Q8LF97PRO:PR:Q8LF97ProteinModelPortal:Q8LF97Proteomes:UP000006548
RefSeq:NP_001118876.1RefSeq:NP_567113.1SMART:SM00512SMR:Q8LF97
STRING:3702.AT3G61415.1SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT3G61415
tair10-symbols:ASK21tair10-symbols:SK21UniGene:At.34286UniPathway:UPA00143
UniProt:Q8LF97
Coordinates (TAIR10) chr3:-:22722962..22725577
Molecular Weight (calculated) 40024.70 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.71
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEGEMAIIK PEMMKSYIWL ETADGSIQQV EQEVAMFCPM ICQEVIQKGV GSSKNYAISL PQRVNPAMLS LIFDYCRFHQ VPGRSNKERK VYDEKFIRMD
101: TKRLCELTSA ADSLQLKPLV DLTSRALARI IEGKTPEEIR EIFHLPDDLT EEEKLEPLKN TMDDPRIRLL NRLYAKKRKE LKEREKLKSV EVEEHVDERS
201: VDDLLSFING RDPKVVKTSK SKKKNKKRKE QKNGSSNGTC EALEKDLHNL DSKSQSAEIV DNTASCLGDV SNLPSMEDDI FTPKTEFEDG YIDDEIDPAL
301: KELLDREVED FARRLNSSWV LSIGQERQPV NFSINGNGTS RRLTGPAAGH K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)