AT5G20600.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:6966345..6967943 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59992.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.19 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
| Length | 532 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKRNRVPPA EQALPIEEDC KSLIKKLASC KQSIRDRSLR TVLRTWLPEQ TEISDEDMKK LWQGIFYCVW HADKSLYQSE LIDRLSSALQ SLPLPLSIHY 101: FTVFLFTMRR EWSRIDRLRL DKFYLLIRRF LHGFFSLIDS NSWDLEFTRR LMGILFDGTL LADDKFQGNG VNYHITSAFV EELRPFLPLR KEVLELLFAP 201: FVKIMGVVND KILVGKIKSN LFDELLKMGK KLLIIKQSGD DAVPEDDDVV VLGSIALSME FAKRFYELGS SPECHQGNRK LIFALHKEFL QLEKDMSSSS 301: IEVSIVEASR PGNDEVPESV PVSESNTNVV SKSKKIVANG SSSKKKGLKK CSKTKKDSVK KGAVMDSVVD LGNKDESFDE TMISDLRQEF EKIASEMSPS 401: KSEVASVCDV AEPVSVSKKT KKRKRENKGE EQVSTVNRDA AETSLAGPSS EKSSKRVRFA MKNNLVWKPH CPLPPQDLRC PPSATPRGSA LKQGIPAGPV 501: RELASRKTKK KVKPAARRGV KSIKNLKKKL SP |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)