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AT1G61350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.492
nucleus 0.392
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 1255 Blast hits to 1059 proteins in 157 species: Archae - 0; Bacteria - 2; Metazoa - 269; Fungi - 116; Plants - 761; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:AC004255EMBL:AY075667
EMBL:CP002684EnsemblPlants:AT1G61350EnsemblPlants:AT1G61350.1entrez:842429
Gene3D:1.25.10.10GeneID:842429Gramene:AT1G61350.1hmmpanther:PTHR23315
hmmpanther:PTHR23315:SF56HOGENOM:HOG000238801InterPro:IPR000225InterPro:IPR011989
InterPro:IPR016024KEGG:ath:AT1G61350ncoils:CoilOMA:LFPLKWQ
Pfscan:PS50176PhylomeDB:O64785PIR:B96639PROSITE:PS50176
Proteomes:UP000006548RefSeq:NP_564774.1SMART:SM00185SMR:O64785
STRING:3702.AT1G61350.1SUPFAM:SSF48371TAIR:AT1G61350UniGene:At.26275
UniProt:O64785
Coordinates (TAIR10) chr1:+:22634099..22635820
Molecular Weight (calculated) 63024.50 Da
IEP (calculated) 6.33
GRAVY (calculated) 0.04
Length 573 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEEACEESS KASIEKAIEA ISSLISLSHS IKSFNIKWQL IRTKLQELYS GLDSLRNLNS GFDPSLSSLI SAILISLKDT YDLATRCVNV SFSGKLLMQS
101: DLDVMAGKFD GHTRNLSRIY SAGILSHGFA IVVLKPNGNA CKDDMRFYIR DLLTRMKIGD LEMKKQALVK LNEAMEEDDR YVKILIEISD MVNVLVGFLD
201: SEIGIQEESA KAVFFISGFG SYRDVLIRSG VIGPLVRVLE NGNGVGREAS ARCLMKLTEN SENAWSVSAH GGVSALLKIC SCSDFGGELI GTSCGVLRNL
301: VGVEEIKRFM IEEDHTVATF IKLIGSKEEI VQVNSIDLLL SMCCKDEQTR DILVREGGIQ ELVSVLSDPN SLSSSKSKEI ALRAIDNLCF GSAGCLNALM
401: GCKFLDHLLN LLRNGEISVQ ESALKVTSRL CSLQEEVKRI MGEAGFMPEL VKFLDAKSID VREMASVALY CLISVPRNRK KFAQDDFNIS YILQLLDHED
501: GSNVSSDSGN TKFLISILMS LTSCNSARRK IASSGYLKSI EKLAETEGSD AKKLVKKLSM NRFRSILSGI WHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)