suba logo
AT5G22390.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3049)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3049); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT1G54740.1); Has 218 Blast hits to 214 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 3; Plants - 164; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXM3eggNOG:ENOG410YM6VEMBL:AB007651EMBL:AK117490
EMBL:AY080698EMBL:BT004988EMBL:CP002688EnsemblPlants:AT5G22390
EnsemblPlants:AT5G22390.1entrez:832300GeneID:832300Gramene:AT5G22390.1
hmmpanther:PTHR33155hmmpanther:PTHR33155:SF9HOGENOM:HOG000152561InterPro:IPR021410
KEGG:ath:AT5G22390OMA:THHDETPPfam:PF11250PhylomeDB:Q9FMR2
Proteomes:UP000006548RefSeq:NP_197631.1TAIR:AT5G22390UniGene:At.31087
UniGene:At.67914UniProt:Q9FMR2
Coordinates (TAIR10) chr5:-:7418383..7418991
Molecular Weight (calculated) 23438.40 Da
IEP (calculated) 4.49
GRAVY (calculated) -1.38
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAYGSFHRI FDNPRQDNSP KSFLDTLSSS SPWNPSKGLH VTTHHDETPP PFTEIFGELH FRESSHSSYE KTSAENSSLQ LCTEGLGSES YYGLEDEKVN
101: GDGDGDDDEI EVKGKDNGSN DEEEWEPRRK ERKEYPPAMT RMSFKTYRKE GRLVLEEVRI PRREFLRASR EDGRLRLKLV QPEDDHDEEE ENEKDKHVDE
201: DE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)