suba logo
AT3G06020.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3049)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3049); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT5G19260.1); Has 5181 Blast hits to 1744 proteins in 177 species: Archae - 19; Bacteria - 80; Metazoa - 2761; Fungi - 308; Plants - 233; Viruses - 99; Other Eukaryotes - 1681 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU4NeggNOG:ENOG411077PEMBL:AC013454EMBL:CP002686
EnsemblPlants:AT3G06020EnsemblPlants:AT3G06020.1entrez:819773GeneID:819773
Genevisible:Q9SFG6GO:GO:0010075Gramene:AT3G06020.1hmmpanther:PTHR33155
hmmpanther:PTHR33155:SF4HOGENOM:HOG000090645InParanoid:Q9SFG6InterPro:IPR021410
KEGG:ath:AT3G06020ncoils:CoilOMA:QTMETRTPaxDb:Q9SFG6
Pfam:PF11250Pfam:Q9SFG6PhylomeDB:Q9SFG6PRIDE:Q9SFG6
PRO:PR:Q9SFG6ProteinModelPortal:Q9SFG6Proteomes:UP000006548RefSeq:NP_187253.1
STRING:3702.AT3G06020.1TAIR:AT3G06020UniGene:At.53198UniProt:Q9SFG6
Coordinates (TAIR10) chr3:+:1813267..1814169
Molecular Weight (calculated) 33897.10 Da
IEP (calculated) 4.59
GRAVY (calculated) -0.91
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVVYQSYF ESQHFEPRAL RLRLSSHTNP QLSTPLKSHF QNSSIAPQDN PITINAASLP SSSPNPSSNS DTNSGSWSFL ESLSNSSSND KEKKTLPLFQ
101: SPSSRRTLSD ESLALCTESL GSETGSDIIH EDMFSISSEL QTMETRTTST TSNPSRQDRK RNTMASLPPP LTSMIGFDCI EVKSHRENGR LVMMATRPPP
201: RNRCLQDRSN GCVRLAILID SDDHIETETK EEKEEEEEET IETVRDNEEE IPEYKEEEEE KEEEIKVKGV EKVQRSRRCI EGDRENRGFL NWESLCVATS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)