suba logo
AT1G78580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.674
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : trehalose-6-phosphate synthase
Curator
Summary (TAIR10)
Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain but no trehalose phosphatase (TPP)-like domain. ATTPS1 is able to complement yeast tps1 mutants in vivo. The gene product modulates cell growth but not cell differentiation by determining cell wall deposition and cell division.
Computational
Description (TAIR10)
trehalose-6-phosphate synthase (TPS1); CONTAINS InterPro DOMAIN/s: Alpha,alpha-trehalose-phosphate synthase (InterPro:IPR012766), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 2 (TAIR:AT1G16980.1); Has 6189 Blast hits to 3807 proteins in 1021 species: Archae - 45; Bacteria - 1772; Metazoa - 831; Fungi - 808; Plants - 384; Viruses - 0; Other Eukaryotes - 2349 (source: NCBI BLink).
Protein Annotations
BRENDA:2.4.1.15CAZy:GT20EC:2.4.1.15eggNOG:COG0380
eggNOG:COG1877eggNOG:KOG1050EMBL:AC007260EMBL:AF370287
EMBL:CP002684EMBL:Y08568EnsemblPlants:AT1G78580EnsemblPlants:AT1G78580.1
entrez:844194ExpressionAtlas:Q9SYM4Gene3D:3.40.50.1000GeneID:844194
Genevisible:Q9SYM4GO:GO:0003825GO:GO:0005576GO:GO:0005618
GO:GO:0005773GO:GO:0005991GO:GO:0005992GO:GO:0009793
GO:GO:0009832GO:GO:0010182GO:GO:0051301Gramene:AT1G78580.1
gramene_pathway:2.4.1.15gramene_pathway:TRESYN-PWYhmmpanther:PTHR10788hmmpanther:PTHR10788:SF6
HOGENOM:HOG000191477InParanoid:Q9SYM4InterPro:IPR001830InterPro:IPR003337
InterPro:IPR012766InterPro:IPR023214iPTMnet:Q9SYM4KEGG:ath:AT1G78580
KO:K16055OMA:NPYDEAGPaxDb:Q9SYM4Pfam:PF00982
Pfam:PF02358Pfam:Q9SYM4PhylomeDB:Q9SYM4PIR:D96814
PRIDE:Q9SYM4PRO:PR:Q9SYM4ProteinModelPortal:Q9SYM4Proteomes:UP000006548
RefSeq:NP_177979.1SMR:Q9SYM4STRING:3702.AT1G78580.1SUPFAM:SSF53756
SUPFAM:SSF56784TAIR:AT1G78580tair10-symbols:ATTPS1tair10-symbols:TPS1
TIGRfam:TIGR02400TIGRFAMs:TIGR02400UniGene:At.198UniGene:At.71030
UniProt:Q9SYM4UniProt:W8PVS8
Coordinates (TAIR10) chr1:-:29552495..29557482
Molecular Weight (calculated) 105982.00 Da
IEP (calculated) 7.16
GRAVY (calculated) -0.45
Length 942 amino acids
Sequence (TAIR10)
(BLAST)
001: MPGNKYNCSS SHIPLSRTER LLRDRELREK RKSNRARNPN DVAGSSENSE NDLRLEGDSS RQYVEQYLEG AAAAMAHDDA CERQEVRPYN RQRLLVVANR
101: LPVSAVRRGE DSWSLEISAG GLVSALLGVK EFEARWIGWA GVNVPDEVGQ KALSKALAEK RCIPVFLDEE IVHQYYNGYC NNILWPLFHY LGLPQEDRLA
201: TTRSFQSQFA AYKKANQMFA DVVNEHYEEG DVVWCHDYHL MFLPKCLKEY NSKMKVGWFL HTPFPSSEIH RTLPSRSELL RSVLAADLVG FHTYDYARHF
301: VSACTRILGL EGTPEGVEDQ GRLTRVAAFP IGIDSDRFIR ALEVPEVIQH MKELKERFAG RKVMLGVDRL DMIKGIPQKI LAFEKFLEEN ANWRDKVVLL
401: QIAVPTRTDV PEYQKLTSQV HEIVGRINGR FGTLTAVPIH HLDRSLDFHA LCALYAVTDV ALVTSLRDGM NLVSYEFVAC QEAKKGVLIL SEFAGAAQSL
501: GAGAILVNPW NITEVAASIG QALNMTAEER EKRHRHNFHH VKTHTAQEWA ETFVSELNDT VIEAQLRISK VPPELPQHDA IQRYSKSNNR LLILGFNATL
601: TEPVDNQGRR GDQIKEMDLN LHPELKGPLK ALCSDPSTTI VVLSGSSRSV LDKNFGEYDM WLAAENGMFL RLTNGEWMTT MPEHLNMEWV DSVKHVFKYF
701: TERTPRSHFE TRDTSLIWNY KYADIEFGRL QARDLLQHLW TGPISNASVD VVQGSRSVEV RAVGVTKGAA IDRILGEIVH SKSMTTPIDY VLCIGHFLGK
801: DEDVYTFFEP ELPSDMPAIA RSRPSSDSGA KSSSGDRRPP SKSTHNNNKS GSKSSSSSNS NNNNKSSQRS LQSERKSGSN HSLGNSRRPS PEKISWNVLD
901: LKGENYFSCA VGRTRTNARY LLGSPDDVVC FLEKLADTTS SP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)