AT3G21600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.611 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Senescence/dehydration-associated protein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Senescence/dehydration-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT4G15450.1); Has 135 Blast hits to 135 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7606735..7608364 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 40457.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.31 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||
| Length | 374 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGCFGPSKAS RTRNNEHDKI TRQNPSHQPQ TMRAEEVLLQ IPRCRVHLIG ESEAVELASG DFKLVKVSDN GVTLAMIVRI GHDLQWPVIR DEPVVKLDAR 101: DYLFTLPVKD GDPLSYGVTF SGDDRDVALV NSLKLLDQFL SENSCFSSTA SSKVNNGIDW QEFAPRIEDY NNVVAKAIAG GTGHIIRGIF SLSNAYSNQV 201: HKGGDIMITK AEESQRNGSY NNGNSSGNEK KNGINTHLQR VRKLSKATEN LSKTMLNGAG VVSGSVMVPM MKSKPGMAFF SMVPGEVLLA SLDALNKILD 301: ATEAAERQTL SATSRAATRM VSERFGDNAG EATGDVLATA GHAAGTAWNV LKIRKTFYPS SSLTSGIVKN APRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)