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AT4G38530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phospholipase C1
Curator
Summary (TAIR10)
Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
Computational
Description (TAIR10)
phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G38530-MONOMERBRENDA:3.1.4.11EC:3.1.4.11eggNOG:ENOG410XPSW
eggNOG:KOG0169EMBL:AK222239EMBL:AL035540EMBL:AL161593
EMBL:CP002687EMBL:U13203EnsemblPlants:AT4G38530EnsemblPlants:AT4G38530.1
entrez:830010Gene3D:1.10.238.10Gene3D:2.60.40.150Gene3D:3.20.20.190
GeneID:830010Genevisible:Q56W08GO:GO:0004435GO:GO:0004871
GO:GO:0005622GO:GO:0005886GO:GO:0016042GO:GO:0035556
Gramene:AT4G38530.1gramene_pathway:3.1.4.3gramene_pathway:LIPASYN-PWYhmmpanther:PTHR10336
hmmpanther:PTHR10336:SF105HOGENOM:HOG000244119InParanoid:Q56W08InterPro:IPR000008
InterPro:IPR000909InterPro:IPR001192InterPro:IPR001711InterPro:IPR011992
InterPro:IPR017946KEGG:00562+3.1.4.11KEGG:04070+3.1.4.11KEGG:ath:AT4G38530
KO:K05857OMA:NAFYRYLPANTHER:PTHR10336PaxDb:Q56W08
Pfam:PF00168Pfam:PF00387Pfam:PF00388Pfam:PF09279
Pfam:Q56W08Pfscan:PS50004Pfscan:PS50007Pfscan:PS50008
PhylomeDB:Q56W08PIR:T05681PRIDE:Q56W08PRINTS:PR00390
PRO:PR:Q56W08PROSITE:PS50004PROSITE:PS50007PROSITE:PS50008
ProteinModelPortal:Q56W08Proteomes:UP000006548Reactome:R-ATH-114604Reactome:R-ATH-1855204
Reactome:R-ATH-202433Reactome:R-ATH-399997Reactome:R-ATH-416476Reactome:R-ATH-434316
Reactome:R-ATH-5607764RefSeq:NP_195565.2SMART:SM00148SMART:SM00149
SMART:SM00239SMR:Q56W08STRING:3702.AT4G38530.1SUPFAM:SSF47473
SUPFAM:SSF49562SUPFAM:SSF51695TAIR:AT4G38530tair10-symbols:ATPLC1
tair10-symbols:PLC1UniGene:At.2775UniProt:Q56W08
Coordinates (TAIR10) chr4:+:18020708..18022898
Molecular Weight (calculated) 64947.50 Da
IEP (calculated) 8.82
GRAVY (calculated) -0.51
Length 564 amino acids
Sequence (TAIR10)
(BLAST)
001: MSESFKVCFC CSRSFKEKTR QPPVSIKRLF EAYSRNGKMS FDELLRFVSE VQGERHAGLD YVQDIFHSVK HHNVFHHHGL VHLNAFYRYL FSDTNSPLPM
101: SGQVHHDMKA PLSHYFVYTG HNSYLTGNQV NSRSSVEPIV QALRKGVKVI ELDLWPNPSG NAAEVRHGRT LTSHEDLQKC LTAIKDNAFH VSDYPVIITL
201: EDHLPPKLQA QVAKMLTKTY RGMLFRRVSE SFKHFPSPEE LKGKILISTK PPKEYLESKT VHTTRTPTVK ETSWNRVANK ILEEYKDMES EAVGYRDLIA
301: IHAANCKDPS KDCLSDDPEK PIRVSMDEQW LDTMVRTRGT DLVRFTQRNL VRIYPKGTRV DSSNYDPHVG WTHGAQMVAF NMQGHGKQLW IMQGMFRGNG
401: GCGYVKKPRI LLDEHTLFDP CKRFPIKTTL KVKIYTGEGW DLDFHHTHFD QYSPPDFFVK IGIAGVPRDT VSYRTETAVD QWFPIWGNDE FLFQLSVPEL
501: ALLWFKVQDY DNDTQNDFAG QTCLPLPELK SGVRAVRLHD RTGKAYKNTR LLVSFALDPP YTFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)