AT1G62030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G02540.1); Has 1453 Blast hits to 648 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 1439; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22924309..22926540 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85960.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.49 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||
| Length | 743 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFEGEVISA ISQLISIDDP WEVDNGDANT EIIARVIEIS YVSNTFCEYA MLLTQQKAES ELMLLITQTI SFYNSMDLDS QPEPLRKLIS FIAKKADLDY 101: YVDPLLEQDL EVLPLFGKTL SLEPEPELIS LIRKIVSLVI SMDPKWKKLI SLCPQVAVRL ENGILHVDEE FVWETNDKWC CFPLFWLKFR SPEQDATHFF 201: CRGCNGKNHN ENNKAPVEIK HPLHPRHSLR LALLRKSNET RQCYCCDVSL QEIFYYCSAC DYAMNIACVE KPPVYSIDHS KWHEHTLALF PRQTPFACSL 301: CSLTHTSCPF YICPPCDFVA HQRCISLPRV IRISRHPHRI SFNHSFGQGD WSCCVCRRKI DNDYGGYSCI KEGCSYVAHS KCATQKNVWD GKELEGILEE 401: DEKVEPPFVR ISDRIIEHFS HQHHHLRLDE NTGRDYDVNK LCQACIMPIY SGNFYSCMQC DYILHEKCAN LSRKMHHPIH PHMLTLKVGS RGLVEHSVDP 501: CSACPWKCKA GFFYECEQQD KDEYLFKLHV QCATMSEPLV HKSHEHSLFL TSKPEEQRRC SVCKKLEQFS TNETFNCIEC DYFALCFGCA TLPQEVRYEH 601: DKHMLTLSYG EETCITTYWC DICEQEIDPK ERFYTCGEYC CVTLHIECLL GQDLYVKPGS SWISFSFNGE KIYVRANDHH MTRPICSHCK KRCPHKIVLE 701: SSGSKFCSTS CVGYFLSTKV NTAGHREYLQ RRGYGNYEFS ALT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)