suba logo
AT1G20650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G76370.1); Has 115469 Blast hits to 114023 proteins in 4226 species: Archae - 107; Bacteria - 13502; Metazoa - 42790; Fungi - 9725; Plants - 32710; Viruses - 380; Other Eukaryotes - 16255 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G20650-MONOMEReggNOG:COG0515eggNOG:KOG1187EMBL:AC027665
EMBL:AC069251EMBL:AK176526EMBL:CP002684EnsemblPlants:AT1G20650
EnsemblPlants:AT1G20650.1entrez:838654Gene3D:2.60.120.200GeneID:838654
GO:GO:0004674GO:GO:0005524Gramene:AT1G20650.1hmmpanther:PTHR27001
hmmpanther:PTHR27001:SF3InterPro:IPR000719InterPro:IPR008271InterPro:IPR011009
InterPro:IPR013320InterPro:IPR017441KEGG:ath:AT1G20650OMA:WSRPFLK
Pfam:PF00069Pfam:PF07714Pfscan:PS50011PhylomeDB:Q9LDZ5
PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011Proteomes:UP000006548
Reactome:R-ATH-450302Reactome:R-ATH-450321RefSeq:NP_173489.2scanprosite:PS00107
scanprosite:PS00108SMART:SM00220SMR:Q9LDZ5STRING:3702.AT1G20650.1
SUPFAM:SSF56112TAIR:AT1G20650UniGene:At.41699UniGene:At.47635
UniProt:Q9LDZ5
Coordinates (TAIR10) chr1:-:7158422..7160022
Molecular Weight (calculated) 42259.80 Da
IEP (calculated) 8.39
GRAVY (calculated) -0.25
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MTCCFSCLNP RTKDIRVDID NARCNSRYQT DSSVHGSDTT GTESISGILV NGKVNSPIPG GGARSFTFKE LAAATRNFRE VNLLGEGGFG RVYKGRLDSG
101: QVVAIKQLNP DGLQGNREFI VEVLMLSLLH HPNLVTLIGY CTSGDQRLLV YEYMPMGSLE DHLFDLESNQ EPLSWNTRMK IAVGAARGIE YLHCTANPPV
201: IYRDLKSANI LLDKEFSPKL SDFGLAKLGP VGDRTHVSTR VMGTYGYCAP EYAMSGKLTV KSDIYCFGVV LLELITGRKA IDLGQKQGEQ NLVTWSRPYL
301: KDQKKFGHLV DPSLRGKYPR RCLNYAIAII AMCLNEEAHY RPFIGDIVVA LEYLAAQSRS HEARNVSSPS PEISRTPRRD L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)