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AT4G18570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT3G25690.3); Has 41355 Blast hits to 22856 proteins in 1198 species: Archae - 106; Bacteria - 4898; Metazoa - 15706; Fungi - 4501; Plants - 9175; Viruses - 1532; Other Eukaryotes - 5437 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IPJSeggNOG:ENOG410YDCUEMBL:AY128285EMBL:BT004523
EMBL:CP002687EnsemblPlants:AT4G18570EnsemblPlants:AT4G18570.1entrez:827588
GeneID:827588Gramene:AT4G18570.1hmmpanther:PTHR31342hmmpanther:PTHR31342:SF8
HOGENOM:HOG000070980KEGG:ath:AT4G18570ncoils:CoilOMA:EMERQMT
PhylomeDB:Q8L7S5Proteomes:UP000006548RefSeq:NP_193591.2STRING:3702.AT4G18570.1
SUPFAM:SSF101447TAIR:AT4G18570UniGene:At.23905UniGene:At.70231
UniProt:Q8L7S5
Coordinates (TAIR10) chr4:+:10231439..10234534
Molecular Weight (calculated) 71617.10 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.64
Length 642 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAGKVRVTM GFHKSPSTKK TKDMPSPLPL PPPPPPPLKP PSSGSATTKP PINPSKPGFT RSFGVYFPRA SAQVHATAAA ASHNGVVSEL RRQVEELRER
101: EALLKTENLE VKLLRESVSV IPLLESQIAD KNGEIDELRK ETARLAEDNE RLRREFDRSE EMRRECETRE KEMEAEIVEL RKLVSSESDD HALSVSQRFQ
201: GLMDVSAKSN LIRSLKRVGS LRNLPEPITN QENTNKSISS SGDADGDIYR KDEIESYSRS SNSEELTESS SLSTVRSRVP RVPKPPPKRS ISLGDSTENR
301: ADPPPQKSIP PPPPPPPPPL LQQPPPPPSV SKAPPPPPPP PPPKSLSIAS AKVRRVPEVV EFYHSLMRRD STNSRRDSTG GGNAAAEAIL ANSNARDMIG
401: EIENRSVYLL AIKTDVETQG DFIRFLIKEV GNAAFSDIED VVPFVKWLDD ELSYLVDERA VLKHFEWPEQ KADALREAAF CYFDLKKLIS EASRFREDPR
501: QSSSSALKKM QALFEKLEHG VYSLSRMRES AATKFKSFQI PVDWMLETGI TSQIKLASVK LAMKYMKRVS AELEAIEGGG PEEEELIVQG VRFAFRVHQF
601: AGGFDAETMK AFEELRDKAR SCHVQCQSQT HQHKLCFRST PC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)