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AT1G62050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Protein of unknown function DUF3424 (InterPro:IPR021832), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G11740.1); Has 1256 Blast hits to 984 proteins in 147 species: Archae - 0; Bacteria - 27; Metazoa - 615; Fungi - 59; Plants - 389; Viruses - 2; Other Eukaryotes - 164 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNMSeggNOG:KOG0522EMBL:AY034904EMBL:BT003006
EMBL:CP002684EnsemblPlants:AT1G62050EnsemblPlants:AT1G62050.1entrez:842501
Gene3D:1.25.40.20GeneID:842501GO:GO:0048046Gramene:AT1G62050.1
hmmpanther:PTHR12447hmmpanther:PTHR12447:SF7HOGENOM:HOG000239603InterPro:IPR002110
InterPro:IPR020683InterPro:IPR021832KEGG:ath:AT1G62050OMA:QFQPPRR
PANTHER:PTHR12447Pfam:PF11904Pfscan:PS50088Pfscan:PS50297
PhylomeDB:Q94CF4PROSITE:PS50088PROSITE:PS50297Proteomes:UP000006548
RefSeq:NP_564790.3SMART:SM00248SMR:Q94CF4STRING:3702.AT1G62050.1
SUPFAM:SSF48403TAIR:AT1G62050UniGene:At.10751UniProt:Q94CF4
Coordinates (TAIR10) chr1:-:22936323..22938874
Molecular Weight (calculated) 69953.20 Da
IEP (calculated) 10.21
GRAVY (calculated) -0.54
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MARPSSASAT TAIRPEDYSH SPVHYAVVLG DHGALTRLLS SLPKLGDPEQ IRTESDSLSQ ERVADQISAV LDRRDVPSRE TPLHLAVRLD DLFAARAISS
101: AGGDISLQNA SGWNPLQEAF CRRNSEVMKV LLRHHHRLAW CKWRRRLPRL IAVLRRMRDF YMEISFHFES SVIPFVGKIA PSDTYKIWKR DGNLRADTTL
201: AGFDGLKIQR ADQSFLFLGD GDESLDISPG SLLVLNRDDR KILDAFESAG APISDSDIAG FCSQSSLYRP GMDVTKAELV GRTNWRRQEK MENVGEWKAR
301: VYEIQKVTFS FRSRKIVTGD GSEQVLPLEL DEDDEGFLVA ENPSFLAPPP RSQRRHSSFV KEDRDWISVG RKSVDVYPSA APPPPRQSQS PRRSVSQFQP
401: PRRSMAQVQP PRRSVAQAQP PRRSVALPST VSPVNPPPSP QIKEKEFVKS LHPSVWLTEQ FPLKTEELLP LLDILANKVK AVARMRDLLT TKFPPGTFPV
501: KLSIPVVPTV KVVITFTKFV ELPPAETFYT PLSSPRFLYS ATAGEEDHSD GEKPDARNSI SRPSTWLRLA TGKGSHRRVE EEEQQTPDPF AIPIGYKWTS
601: MSSSNSKSGN SSKMKKSKST KRTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)