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AT5G01170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF740)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF740); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF740) (TAIR:AT3G09070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AL137189EMBL:BT015922EMBL:CP002688EnsemblPlants:AT5G01170
EnsemblPlants:AT5G01170.1entrez:831732GeneID:831732Gramene:AT5G01170.1
hmmpanther:PTHR31659hmmpanther:PTHR31659:SF8InterPro:IPR008004KEGG:ath:AT5G01170
OMA:GANPKMQPfam:PF05340PhylomeDB:Q9LFB9PIR:T45957
Proteomes:UP000006548RefSeq:NP_195737.1STRING:3702.AT5G01170.1TAIR:AT5G01170
UniGene:At.33940UniProt:Q9LFB9
Coordinates (TAIR10) chr5:+:58315..60021
Molecular Weight (calculated) 62298.20 Da
IEP (calculated) 9.03
GRAVY (calculated) -0.94
Length 568 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLSADQAPV TAVDELAPPS QPHRLSTSCD LHPEERFSGF CPSCLCDRLS VLDHNAAPPP SSSSRKPPSI SAVSLKALFK PSSSGTNNSN GNGRVRPGFF
101: PELRRTKSFS AKNNEGFSGG FEPQRRSCDV RLRDDERNLP INEAASVDKI EEEARESSVS EIVLEVTEEA EIEEDEENGE KDPGEIVEEK SSEIGEEEEE
201: LKPMKDYMDL YSQTKKPSVK DFAGSFFSAA SVFSKKLQKW KQKQKVKKPR NGVGGGRPQS EIGVGRRSSD TDPRFSLDAG RFSVDIGRIS MDDSRYSLDE
301: PRASWDGHLI GRTTAARVPL PPSMLSVVEN APLNRSDMQI PSSPSIKPIS GDSDPIIIIP GGSNQTRDYY TGPPSSRRRK SLDRSNSIRK IVTELEDVKS
401: VSNSTTTIDS NSMETAENKG NQNGDKKSRR WGKWSILGFI YRKGKDDEEE DRYSRSNSAG MVERSLSESW PEMRNGEGGG PKMRRSNSNV SWRSSGGGSA
501: RNKSSRYSSK DGENGMLRFY LTPMRRSWKT SGGSGGGGGG GGGGGWEKTA AKANSHGHSI ARRVMRLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)