AT5G20540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BREVIS RADIX-like 4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BREVIS RADIX-like 4 (BRXL4); CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (TAIR:AT3G14000.2); Has 719 Blast hits to 410 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 715; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6947943..6951760 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42885.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.43 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||
| Length | 384 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTCIARSKR AGDESSGQPD DPDSKNAKSL TSQLKDMALK ASGAYRHCTP CTAAQGQGQG QGPIKNNPSS SSVKSDFESD QRFKMLYGRS NSSITATAAV 101: AATQQQQPRV WGKEMEARLK GISSGEATPK SASGRNRVDP IVFVEEKEPK EWVAQVEPGV LITFVSLPGG GNDLKRIRFS RDMFNKLQAQ RWWADNYDKV 201: MELYNVQKLS RQAFPLPTPP RSEDENAKVE YHPEDTPATP PLNKERLPRT IHRPPGLAAY SSSDSLDHNS MQSQQFYDSG LLNSTPKVSS ISVAKTETSS 301: IDASIRSSSS RDADRSEEMS VSNASDVDNE WVEQDEPGVY ITIKVLPGGK RELRRVRFSR ERFGEMHARL WWEENRARIH EQYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)