AT1G50270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.331 vacuole 0.265 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 37475 Blast hits to 13706 proteins in 234 species: Archae - 0; Bacteria - 8; Metazoa - 62; Fungi - 67; Plants - 36828; Viruses - 0; Other Eukaryotes - 510 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18622044..18623834 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67399.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 596 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIELKTLLDL PLHFLHLKQI HCLLLTSPIF YTRRDLFLSR LLRRCCTAAT QFRYARRLLC QLQTLSIQLW DSLIGHFSGG ITLNRRLSFL AYRHMRRNGV 101: IPSRHTFPPL LKAVFKLRDS NPFQFHAHIV KFGLDSDPFV RNSLISGYSS SGLFDFASRL FDGAEDKDVV TWTAMIDGFV RNGSASEAMV YFVEMKKTGV 201: AANEMTVVSV LKAAGKVEDV RFGRSVHGLY LETGRVKCDV FIGSSLVDMY GKCSCYDDAQ KVFDEMPSRN VVTWTALIAG YVQSRCFDKG MLVFEEMLKS 301: DVAPNEKTLS SVLSACAHVG ALHRGRRVHC YMIKNSIEIN TTAGTTLIDL YVKCGCLEEA ILVFERLHEK NVYTWTAMIN GFAAHGYARD AFDLFYTMLS 401: SHVSPNEVTF MAVLSACAHG GLVEEGRRLF LSMKGRFNME PKADHYACMV DLFGRKGLLE EAKALIERMP MEPTNVVWGA LFGSCLLHKD YELGKYAASR 501: VIKLQPSHSG RYTLLANLYS ESQNWDEVAR VRKQMKDQQV VKSPGFSWIE VKGKLCEFIA FDDKKPLESD DLYKTLDTVG VQMRLPDELE DVTAES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)