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AT3G12720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : myb domain protein 67
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 67 (MYB67); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 50 (TAIR:AT1G57560.1); Has 8912 Blast hits to 8278 proteins in 476 species: Archae - 0; Bacteria - 2; Metazoa - 680; Fungi - 532; Plants - 5859; Viruses - 3; Other Eukaryotes - 1836 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB024033EMBL:AY039554
EMBL:AY102155EMBL:CP002686EnsemblPlants:AT3G12720EnsemblPlants:AT3G12720.1
entrez:820454Gene3D:1.10.10.60GeneID:820454GO:GO:0003677
GO:GO:0003700GO:GO:0006355Gramene:AT3G12720.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF487IntAct:Q9LTW2InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT3G12720KO:K09422OMA:DLNMDIL
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q9LTW2PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_566434.1SMART:SM00717SMR:Q9LTW2
STRING:3702.AT3G12720.1SUPFAM:SSF46689TAIR:AT3G12720tair10-symbols:ATMYB67
tair10-symbols:ATY53tair10-symbols:MYB67UniGene:At.5673UniProt:Q9LTW2
Coordinates (TAIR10) chr3:-:4043407..4044522
Molecular Weight (calculated) 34746.20 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.71
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)