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AT1G59510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Carbohydrate-binding protein
Curator
Summary (TAIR10)
Encodes CF9.
Computational
Description (TAIR10)
CF9; FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: Carbohydrate-binding protein (TAIR:AT1G10150.1); Has 109 Blast hits to 107 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT8TeggNOG:ENOG411082YEMBL:AB028225EMBL:AB076984
EMBL:AC009317EMBL:CP002684EnsemblPlants:AT1G59510EnsemblPlants:AT1G59510.1
entrez:842241GeneID:842241GO:GO:0016021Gramene:AT1G59510.1
hmmpanther:PTHR21477hmmpanther:PTHR21477:SF12KEGG:ath:AT1G59510OMA:ETFMRTS
PhylomeDB:Q9SLU2PIR:T52434Proteomes:UP000006548RefSeq:NP_564742.1
STRING:3702.AT1G59510.1TAIR:AT1G59510tair10-symbols:CF9TMHMM:TMhelix
UniGene:At.450UniProt:Q9SLU2
Coordinates (TAIR10) chr1:+:21859768..21860913
Molecular Weight (calculated) 42613.10 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.08
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLVRLRDIG SISPQRRRKW LILLAVFGVS GYGVYRVYNS QYIAKKTKRL MKLFSGIVSF AEMVIDSAET ISIVSRDLKE FLESNSHEIP NSLKQLSKIT
101: KSKEFTDSLA RVSEAVAIGV FRGYNSDPNV EKESNLSVVD RVFSEEGAGF VSVVVGSFAK NLVLGFYSGE IEIGSDDSLK PRWMNLLSDD KCRELLADCI
201: ERFTSSAVSV YIDKTVGVNT YDQIFAGLTN PKHRDSARDV LVSVCNGALE TFMRTSHDVF TSSGEKTDSS LRKSENRENG WAEALSTTLA VPSNRKFMFD
301: VTGRVTLETM RSILEFVILK TSQSFKRSLD VIHEEVTERG RQVVGYVGAK SSVIITVCLA VYFHIFNRFV RGPPVCLSQQ F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)