AT5G56420.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.988 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box/RNI-like/FBD-like domains-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G32375.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:22850863..22852334 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 48150.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 422 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVSYRDRLSQ LPDDFLLQIL SWLPTKDVLV TSLLSKRWRF LWTLVPRLNY DLRLHDNTCP RFSQFVDRSL LLHKAPTLES LNIKIGSICF TAEKDVGVWV 101: RIGVDRFVRE LSVSYCSGEE PIRLPKCLFT CSTLAVLKLE NITLEDASCY VCFQSLKTLH LLDVKYLDDQ SLPRIISSCS SLEDLVVQRC PGDNVKVVTV 201: TAPSLKTLSL HKSSQAFEGD DDGFLIDTPK LKRVDIEDYW GGFCYIENMP EVVEANVDVI YKNTEKLLGS ITSVKRLALC LITSDAAYPA GTIFSQLVHL 301: ELCTCAPRWW DLLTRLIEDS PKLRVLKLRQ KHIRRAPSPR ASWKQPALPK CLLFHLETFK WELYEGSQKQ KEVATFILKH AIRLKTAIIS PKPTSTLLEK 401: HEMLKDLSSS PRGSSTCELL FD |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)