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AT5G56420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G32375.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20987eggNOG:ENOG410JECJeggNOG:ENOG410ZS8EEMBL:AB009049
EMBL:AY057563EMBL:CP002688EnsemblPlants:AT5G56420EnsemblPlants:AT5G56420.1
EnsemblPlants:AT5G56420.2entrez:835743Gene3D:3.80.10.10GeneID:835743
Gramene:AT5G56420.1Gramene:AT5G56420.2hmmpanther:PTHR32212hmmpanther:PTHR32212:SF112
HOGENOM:HOG000220924InParanoid:Q9FM89InterPro:IPR001810InterPro:IPR006566
InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT5G56420OMA:PRIISSC
PaxDb:Q9FM89Pfam:PF00646Pfam:PF07723Pfam:PF08387
Pfam:Q9FM89Pfscan:PS50181PhylomeDB:Q9FM89PRIDE:Q9FM89
PRO:PR:Q9FM89PROSITE:PS50181ProteinModelPortal:Q9FM89Proteomes:UP000006548
RefSeq:NP_200453.1RefSeq:NP_974943.1SMART:SM00256SMART:SM00579
SMR:Q9FM89SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT5G56420
UniGene:At.8866UniProt:Q9FM89
Coordinates (TAIR10) chr5:-:22850863..22852334
Molecular Weight (calculated) 48150.70 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.05
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSYRDRLSQ LPDDFLLQIL SWLPTKDVLV TSLLSKRWRF LWTLVPRLNY DLRLHDNTCP RFSQFVDRSL LLHKAPTLES LNIKIGSICF TAEKDVGVWV
101: RIGVDRFVRE LSVSYCSGEE PIRLPKCLFT CSTLAVLKLE NITLEDASCY VCFQSLKTLH LLDVKYLDDQ SLPRIISSCS SLEDLVVQRC PGDNVKVVTV
201: TAPSLKTLSL HKSSQAFEGD DDGFLIDTPK LKRVDIEDYW GGFCYIENMP EVVEANVDVI YKNTEKLLGS ITSVKRLALC LITSDAAYPA GTIFSQLVHL
301: ELCTCAPRWW DLLTRLIEDS PKLRVLKLRQ KHIRRAPSPR ASWKQPALPK CLLFHLETFK WELYEGSQKQ KEVATFILKH AIRLKTAIIS PKPTSTLLEK
401: HEMLKDLSSS PRGSSTCELL FD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)