AT1G72090.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Methylthiotransferase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, catalytic activity; INVOLVED IN: metabolic process, RNA modification; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), Aldolase-type TIM barrel (InterPro:IPR013785), Methylthiotransferase, conserved site (InterPro:IPR020612), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), MiaB-like tRNA modifying enzyme, archaeal-type (InterPro:IPR006466); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT4G36390.1); Has 15738 Blast hits to 15705 proteins in 2423 species: Archae - 403; Bacteria - 9758; Metazoa - 296; Fungi - 1; Plants - 135; Viruses - 0; Other Eukaryotes - 5145 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:27123617..27126767 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 65499.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 601 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEDIEDLLAG GVGGAPPGFR LPLNAVGINP KTNKSKRISS KPDQITASNR DSLAPPSMKI PGTQTIYIKT FGCSHNQSDS EYMAGQLSAF GYALTEVPEE 101: ADLWLINTCT VKSPSQSAMS TLITRGRSGK KPLVIAGCVP QGSRDLKELE GVSVVGVQQI DRVVEIVEET LKGHEVRLLT RKTLPALDLP KVRRNNFIEI 201: LPINVGCLGA CTYCKTKHAR GHLGSYTVDS LVERVRTVIS EGVKEIWLSS EDTGAYGRDI GVNLPILLNA IVKELPSDQS TMLRIGMTNP PFILEHLKEI 301: AAVLRHPCVY TFLHVPVQSG SDSVLTAMNR EYTASEFRTV VDTLTELVPG MQIATDIICG FPGETDEDFS QTVELIKDYK FPQVHISQFY PRPGTPAAKM 401: KKVQSKIVKQ RSRELTSVFE AFAPYTGMEC REERIWITEV ATDGIHLVGH TKGYVQVLVT GPESMLGTSA MARITSVGRW SVFGEVIETF SSANRETKSR 501: EETKLPCSSN VSTCETCTCS AESCGEERSG EACNISGNIS GQDDNKGKSK KEEKEVQEVV VPGSSVANWG FIDKALVCGV FVSSVTILVL LISIACRVLL 601: R |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)