suba logo
AT1G63830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLAC8 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLAC8 family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G41390.1); Has 476 Blast hits to 386 proteins in 125 species: Archae - 0; Bacteria - 22; Metazoa - 109; Fungi - 21; Plants - 191; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGQ0eggNOG:ENOG4111Q5UEMBL:AC010852EMBL:AY080856
EMBL:AY117304EMBL:CP002684EnsemblPlants:AT1G63830EnsemblPlants:AT1G63830.1
EnsemblPlants:AT1G63830.2EnsemblPlants:AT1G63830.3entrez:842686GeneID:842686
GO:GO:0005886GO:GO:0016021Gramene:AT1G63830.1Gramene:AT1G63830.2
Gramene:AT1G63830.3hmmpanther:PTHR31152hmmpanther:PTHR31152:SF3HOGENOM:HOG000243552
KEGG:ath:AT1G63830OMA:LSCCADMPhylomeDB:Q9CAJ7PIR:D96663
Proteomes:UP000006548RefSeq:NP_001185304.1RefSeq:NP_176568.1RefSeq:NP_974084.1
STRING:3702.AT1G63830.1TAIR:AT1G63830TMHMM:TMhelixUniGene:At.36076
UniProt:Q9CAJ7
Coordinates (TAIR10) chr1:+:23685408..23687098
Molecular Weight (calculated) 25668.00 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.08
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASQDKLDK MKLRQDYRNL WHSDLMGTVT ADTPYCCISC LCGPCVSYML RRRALYNDMS RYTCCAGYMP CSGRCGESKC PQLCLATEVF LCFGNSVAST
101: RFLLQDEFNI QTTQCDNCII GFMFCLSQVA CIFSIVACIV GSDELSEASQ ILSCCADMVY CTVCACMQTQ HKLEMDKRDG VFGSQPMGVP PAQQMSRFDQ
201: PVPPPVGYPQ SYPPPAQGYP PASYPPPGYP QH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)