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AT3G47550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G62460.1); Has 1858 Blast hits to 1855 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 851; Fungi - 126; Plants - 608; Viruses - 31; Other Eukaryotes - 242 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:BT029525EMBL:CP002686
EnsemblPlants:AT3G47550EnsemblPlants:AT3G47550.1entrez:823909ExpressionAtlas:A1A6K5
Gene3D:3.30.40.10GeneID:823909GO:GO:0008270Gramene:AT3G47550.1
hmmpanther:PTHR23012hmmpanther:PTHR23012:SF57InterPro:IPR011016InterPro:IPR013083
InterPro:IPR022143InterPro:IPR033275KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-
KEGG:00380+6.3.2.-ncoils:CoilPANTHER:PTHR23012Pfam:PF12428
Pfam:PF12906Pfscan:PS51292PhylomeDB:A1A6K5PROSITE:PS51292
Proteomes:UP000006548RefSeq:NP_850667.1SMART:SM00744SMR:A1A6K5
STRING:3702.AT3G47550.3SUPFAM:SSF57850TAIR:AT3G47550UniGene:At.48746
UniGene:At.71217unipathway:UPA00143UniProt:A1A6K5
Coordinates (TAIR10) chr3:+:17523841..17524942
Molecular Weight (calculated) 25778.60 Da
IEP (calculated) 4.07
GRAVY (calculated) -0.52
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MADHLSLCTD RLITSESLDS EKDSDSSGES SYRPQGTDLA SSSVNETEVP REYYAVADEE EPLLQSVECR ICQEEDSTKN LEAPCACNGS LKYAHRKCVQ
101: RWCNEKGDIT CEICHQPYQH GYTAPPPPPP DETIIHIGDD WENGVPLDLT DPRILAMAAA ERHFLEADYD EYSENNSSGA AFCRSAALIL MALLLLRDAL
201: NLTTNPDDED DPTAFFSVCS SLLTFTTSLY RH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)