AT3G22260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.807 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G02070.1); Has 790 Blast hits to 782 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 319; Fungi - 70; Plants - 256; Viruses - 12; Other Eukaryotes - 133 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7871489..7873393 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27735.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.24 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||
| Length | 240 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDENHRNPFA NASTSARASG STSASSNSSF SSSVADTDDD QTIARILAED ESLRREGKLG KRLSHLDSIP HTPRVNREIP DINDATLDHE LLSGRLATYG 101: LAELQMEGDG NCQFRALADQ LFRNADYHKH VRKHVVKQLK QQRKLYEEYV PMKYRHYTRK MKKHGEWGDH VTLQAAADRF EAKICLVTSF RDQSYIEILP 201: HNKNPLREAW LSFWSEVHYN SLYANGDVPT RKPRRKHWLF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)