AT3G02070.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.726 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G22260.1); Has 783 Blast hits to 775 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 340; Fungi - 57; Plants - 249; Viruses - 10; Other Eukaryotes - 127 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr3:+:361368..363132 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 25572.70 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.25 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||
Length | 219 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGDSSSSTSW SSKKDTEDDR MIAFMLSEEY SKLDGAVGRR LSNLAPVPHV PRINCYIPNL NDATLDHQRL LQRLNVYGLC ELKVSGDGNC QFRALSDQLY 101: RSPEYHKQVR REVVKQLKEC RSMYESYVPM KYKRYYKKMG KFGEWGDHIT LQAAADRFAA KICLLTSFRD TCFIEIIPQY QAPKGVLWLS FWSEVHYNSL 201: YDIQAAPVQH KPKRKHWLF |
||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)