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AT3G02070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.726
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine proteinases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G22260.1); Has 783 Blast hits to 775 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 340; Fungi - 57; Plants - 249; Viruses - 10; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
DNASU:821202eggNOG:ENOG410INPXeggNOG:ENOG410ZTTXEMBL:AC011664
EMBL:AK317486EMBL:BT012213EMBL:BT012408EMBL:CP002686
EMBL:JQ013459EnsemblPlants:AT3G02070EnsemblPlants:AT3G02070.1entrez:821202
GeneID:821202Gramene:AT3G02070.1hmmpanther:PTHR12419hmmpanther:PTHR12419:SF3
HOGENOM:HOG000264791InterPro:IPR003323KEGG:ath:AT3G02070MEROPS:C85.A02
OMA:NLAPVPHPfam:PF02338Pfscan:PS50802PhylomeDB:Q9SGA5
PROSITE:PS50802Proteomes:UP000006548RefSeq:NP_186856.1SMR:Q9SGA5
STRING:3702.AT3G02070.1SUPFAM:SSF54001TAIR:AT3G02070UniGene:At.41185
UniProt:Q9SGA5
Coordinates (TAIR10) chr3:+:361368..363132
Molecular Weight (calculated) 25572.70 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.55
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDSSSSTSW SSKKDTEDDR MIAFMLSEEY SKLDGAVGRR LSNLAPVPHV PRINCYIPNL NDATLDHQRL LQRLNVYGLC ELKVSGDGNC QFRALSDQLY
101: RSPEYHKQVR REVVKQLKEC RSMYESYVPM KYKRYYKKMG KFGEWGDHIT LQAAADRFAA KICLLTSFRD TCFIEIIPQY QAPKGVLWLS FWSEVHYNSL
201: YDIQAAPVQH KPKRKHWLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)