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AT4G30510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.764
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of yeast autophagy 18 (ATG18) B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homolog of yeast autophagy 18 (ATG18) B (G18B); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G62770.1); Has 1228 Blast hits to 1183 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 531; Fungi - 398; Plants - 152; Viruses - 2; Other Eukaryotes - 143 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP6YeggNOG:KOG2110EMBL:AL161577EMBL:AY142529
EMBL:CP002687EnsemblPlants:AT4G30510EnsemblPlants:AT4G30510.1entrez:829174
ExpressionAtlas:Q8H1Q8Gene3D:2.130.10.10GeneID:829174GO:GO:0000045
GO:GO:0000422GO:GO:0005774GO:GO:0005829GO:GO:0006497
GO:GO:0015031GO:GO:0019898GO:GO:0032266GO:GO:0034045
GO:GO:0034497GO:GO:0044804GO:GO:0080025Gramene:AT4G30510.1
hmmpanther:PTHR11227hmmpanther:PTHR11227:SF17HOGENOM:HOG000217543InParanoid:Q8H1Q8
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT4G30510
KO:K17908PaxDb:Q8H1Q8Pfam:Q8H1Q8PIR:H85356
PRIDE:Q8H1Q8PRO:PR:Q8H1Q8ProteinModelPortal:Q8H1Q8Proteomes:UP000006548
Reactome:R-ATH-1632852RefSeq:NP_194780.2SMART:SM00320SMR:Q8H1Q8
STRING:3702.AT4G30510.1SUPFAM:SSF50978TAIR:AT4G30510tair10-symbols:ATATG18B
tair10-symbols:ATG18Btair10-symbols:G18BUniGene:At.31830UniProt:Q8H1Q8
Coordinates (TAIR10) chr4:-:14905299..14906915
Molecular Weight (calculated) 33941.60 Da
IEP (calculated) 8.92
GRAVY (calculated) 0.08
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MLYSSDLLAI VGAGEQASLS PRRLCLFKTT TGLPLRELNF LTSILAVRMN KKRLVVVLLE KTFVYDLNTL VMLDTIDTVP NPKGLSAFSP SLEGCYLAVP
101: ASTTKGSVLV YNVMDLQSHS EIDAHRSPLA AIALSSNGMY IATGSEQGTL IRVHLVSEAT KSYSFRRGTY PSTIYSLSFG PSTQLPDILI ATSSSGSIHA
201: FSLSLAINQR SKRSTSFLGS VLPDSVSDAL DPAHHHVLQN AVSSGIRSYA VVRKIDKLEG TSSPSHFTSL RATVSVITYN GYFQEYTLSI NNKNESLWTL
301: EREFNLFSIT TG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)