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AT1G77890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-directed RNA polymerase II protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-directed RNA polymerase II protein; BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase II protein (TAIR:AT4G08540.1); Has 59 Blast hits to 57 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 3; Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJC8eggNOG:ENOG4110TMVEMBL:BT026141EMBL:CP002684
EnsemblPlants:AT1G77890EnsemblPlants:AT1G77890.1entrez:844125ExpressionAtlas:Q147F2
GeneID:844125GO:GO:0003899GO:GO:0010508Gramene:AT1G77890.1
hmmpanther:PTHR21297hmmpanther:PTHR21297:SF1InterPro:IPR018791ncoils:Coil
OMA:EWNLVEYPfam:PF10186Proteomes:UP000006548RefSeq:NP_177912.2
SMR:Q147F2STRING:3702.AT1G77890.1TAIR:AT1G77890UniGene:At.34366
UniProt:Q147F2
Coordinates (TAIR10) chr1:+:29292497..29295440
Molecular Weight (calculated) 52122.50 Da
IEP (calculated) 8.64
GRAVY (calculated) -0.53
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKSTKCAVC YKSFRPSICV DCVNRGLNEY KVKLDSLKSL REVSYFRLSG LLVTKEKAIS QRCWKELQNE KLAKLREKLQ LQVEKLQQSK NTFRSLSRNL
101: KERYGIIEST NVALEESRVH QLENHYSDTI GNHYLVYIDL TSERLYKQAL VMKQICKLFP LSRVTVEGQN KDGSSVQYDQ ICNALLPQGL NPLSVPPKEL
201: AASLGYMVQL LNLVVHKLSV PALHNLGFAG SCSRIWERDS YWNSYPSSPS NGYPLFVPIH DHYSFEEKSS WTGRDTTNFG VTSLKSDGSI EEDYHDLDLD
301: VVSLSSASPH SVETFRNLQQ GIAHLKQSVA HLTVYGYRSL SLEVPSGTST FETFAKLLAT LSSLKEVQSG LSLGLSSSNK QRHEPNKSVW NLNSSSSSTL
401: LNSSHTQPTT WNSSYYNVPN RDPSYMVEFP DVKKDKNSIG EWNLVEYPHS SRQPNHPNKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)